Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0611 ATGCTCTCTCGCTCTCTCAAACCTCGTCACATTCTCTTCTCCCTCCGTTTACTGCCGTTTACCCTCAACCCTAACCCCACCCCTTCATTCCGAGCCTCCCCACACCGTCTCTCCTCTTCATGGCTATCCGAACCCGGAAACCCAATCATCCAATGGCCATCACTACCCCCAAACCCAATCACCCAACCCGCACCAAACCTCGCTCCAAACCTGAACCGGAGCCCAACACCCGATCCTGCTTCTCCCTCCTCAAACGCTTTCTCCGTCATAGCCAACCTCTTCGCCAACCCTTCCGTCTCGCCCGGTCCGGTCCTCCACTCCGCACTCGACCGGTCCGGAATCGAACTGGGCCCGCCCCTCCTGCTCGCCGTGTTCGACCGCTTCGGCTCGTCCCCCAAGCTGCTGCACTCGCTGTTCCTCTGGGCCCAGACGCGGCCCGGGTTCAGGCCCGGCCCAAAGCTCTTTGACTCCATGGTTAACGTGCTCGCGAAGTCGAGGGAGTTTGACTCCGCGTGGAAACTCGTTCTCGATCACGTCGATGGAGACGGGGGAGAAGAAAGGTTGGTCTCCATTGGGACCTTTGCGATCATGATTCGGCGCTACGCGCGTGCAGgtatGTCCAAACTTGCAATTAGAACATTTGAGTTTGCTAGAAATAATAAGTCAATTGTGGATTCTGGCTCAGAAATGAGTTTATTTGAGATATTGATGGATTCACTTTGTAAAGAAGGGTCTGTGAGGGAAGCTTCAGAGTATTTCCTTTGGAAAAAGGAGTTGGACTCAGGTTGGTTTCCTTCTATTCGGGTTTATAACATAATGTTAAATGGATGGTTTCGATCAAGGAAACTCAAGCAGGGTGAGAGACTTTGGGCAGAGATGAAGGAGAATGTGAGACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGGATGCGCCGTGTGGAAAAGGCACTTGAAATGGTTGGTGATATGACCAGAGAAGGAATTGCACCAAATGCAATTGTGTATAACCCAATAATTGATGCACTGGCAGAAGCTGGAAGATTCAAAGAGGCTTTGGGCATGTTGGAACGTTTTCATGTTTTGGAAATAGGCCCTACTGATTCAACATACAATTCTCTGGTAAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGTAAGATTCTTAAAATGATGATAAGTAGGGGTTTTCTCCCAAGTCCCACCACCTATAACTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAATTGAGGAGGGGATGAACCTGTATACAAAGATGATTGAATCTGGTTATACCCCAGATCGGCTAACTTACCATCTTCTGGTGAAGATGTTATGTGAAGAGGAGAAGTTAGACTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCATAATGGATATGACATGGACTTGGCAACGAGTACCATGTTAATTCATTTGCTTTGCAAAATGCGTAGGTTGGAAGAGGCTTTTGCAGAATTTGAGGACATGATAAGAAGGGGTATAGTTCCTCAGTATCTAACTTTCCAGAGAATGAAAGCTGAGTTAAAGAGACAAGGTATGACTGAAATGGCTCAAAAACTTTGTAAGTTGATGTCTTCTGTTCCCTATTCTAGCAACTTGCCAAATACTTATGGTGAAGACAGAGATGATGCACATGCACGAAGAAAATCTATAATTCAGAAAGCCAAAGCATTTTCTGATATGCTGAAGGACTGTAAGGACCCTAGTGAACTTCGTAAGTATAGAAGTTCATCAGAAAAAGCTGTCTCAAACGCAAACTGTTTGCTAGAGGATAAGAGTAAAAATGGTGCAGGATGA 1836 0.4641 MLSRSLKPRHILFSLRLLPFTLNPNPTPSFRASPHRLSSSWLSEPGNPIIQWPSLPPNPITQPAPNLAPNLNRSPTPDPASPSSNAFSVIANLFANPSVSPGPVLHSALDRSGIELGPPLLLAVFDRFGSSPKLLHSLFLWAQTRPGFRPGPKLFDSMVNVLAKSREFDSAWKLVLDHVDGDGGEERLVSIGTFAIMIRRYARAGMSKLAIRTFEFARNNKSIVDSGSEMSLFEILMDSLCKEGSVREASEYFLWKKELDSGWFPSIRVYNIMLNGWFRSRKLKQGERLWAEMKENVRPSVVTYGTLVEGYCRMRRVEKALEMVGDMTREGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSPTTYNYFFRYFSRCGKIEEGMNLYTKMIESGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTMLIHLLCKMRRLEEAFAEFEDMIRRGIVPQYLTFQRMKAELKRQGMTEMAQKLCKLMSSVPYSSNLPNTYGEDRDDAHARRKSIIQKAKAFSDMLKDCKDPSELRKYRSSSEKAVSNANCLLEDKSKNGAG 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0611 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Ssu5g0611 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Ssu5g0611 611 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 99 607 - -
Ssu5g0611 611 MobiDBLite consensus disorder prediction 61 76 - -
Ssu5g0611 611 Pfam PPR repeat family 372 413 IPR002885 -
Ssu5g0611 611 Pfam PPR repeat family 299 347 IPR002885 -
Ssu5g0611 611 Gene3D Tetratricopeptide repeat domain 369 580 IPR011990 GO:0005515
Ssu5g0611 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Ssu5g0611 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Ssu5g0611 611 Pfam PPR repeat 478 507 IPR002885 -
Ssu5g0611 611 Pfam PPR repeat 269 296 IPR002885 -
Ssu5g0611 611 Pfam PPR repeat 235 253 IPR002885 -
Ssu5g0611 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Ssu5g0611 611 PANTHER LEAF PROTEIN-LIKE 99 607 - -
Ssu5g0611 611 MobiDBLite consensus disorder prediction 61 82 - -
Ssu5g0611 611 Gene3D Tetratricopeptide repeat domain 257 368 IPR011990 GO:0005515
Ssu5g0611 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Ssu5g0611 611 TIGRFAM PPR: pentatricopeptide repeat domain 269 296 IPR002885 -
Ssu5g0611 611 TIGRFAM PPR: pentatricopeptide repeat domain 480 509 IPR002885 -
Ssu5g0611 611 TIGRFAM PPR: pentatricopeptide repeat domain 408 440 IPR002885 -
Ssu5g0611 611 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Ssu5g0611 611 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Ssu5g0611 611 TIGRFAM PPR: pentatricopeptide repeat domain 373 405 IPR002885 -
Ssu5g0611 611 Gene3D Tetratricopeptide repeat domain 105 256 IPR011990 GO:0005515
Ssu5g0611 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 296 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0611 Ssu-Chr5 14098730 14108027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0611 147 562 Miscellaneous Gene Families AT4G11690 25.236 4.03e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0611 - - gmx:100793484 1044.26