Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0597 ATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCACTGGAAAGTTGTCAGAGGGGATAATGTTATGATAATAAGGGGCAAAGATAAGGGTGAGAGTGGGACTATTAAGCGTGTCATTCGCTCTCAGAACCGTGTCATTGTTGAGGGTAAAAATCTGGTGAAGAAGCATATCAAGCAAGGGCAAGGTCACGAAGGGGGCATCTTTACAGTTGAAGCCCCAATCCATGCCTCCAACGTGCAAGTTCTTGACCCAGTAACGGGCAAGCCTTGCAAGGTTGGGATTAAATATCTTGAAGATGGCACTAAAGTCAGAGTATCCAGAGGAATAGGAGCATCTGAGTCCATAATCCCTCGACCCGAGATCTTAAAGATAAGAACTACCCCAAGACCTACTGTTCTTGGTCCCAAAGATACTCCGATGGATCTTGTGTTAGAGAAGACTTACGATGCTAAAACAGGAAGGGGCATGCCTGAGCTTTAA 480 0.4562 MGWKAAEKLIRHWKVVRGDNVMIIRGKDKGESGTIKRVIRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGIKYLEDGTKVRVSRGIGASESIIPRPEILKIRTTPRPTVLGPKDTPMDLVLEKTYDAKTGRGMPEL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0597 159 TIGRFAM rplX_bact: ribosomal protein uL24 14 107 IPR003256 GO:0003735|GO:0005840|GO:0006412
Ssu5g0597 159 Hamap 50S ribosomal protein L24 [rplX]. 13 107 IPR003256 GO:0003735|GO:0005840|GO:0006412
Ssu5g0597 159 ProSitePatterns Ribosomal protein L24 signature. 18 35 IPR005825 GO:0003735|GO:0005840|GO:0006412
Ssu5g0597 159 Gene3D - 4 111 IPR014722 -
Ssu5g0597 159 SUPERFAMILY Translation proteins SH3-like domain 10 108 IPR008991 -
Ssu5g0597 159 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 51 108 IPR003256 GO:0003735|GO:0005840|GO:0006412
Ssu5g0597 159 Pfam KOW motif 17 48 IPR005824 -
Ssu5g0597 159 PANTHER 39S RIBOSOMAL PROTEIN L24, MITOCHONDRIAL 1 151 - -
Ssu5g0597 159 CDD KOW_RPL26 18 81 IPR041988 GO:0003723
Ssu5g0597 159 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 1 151 IPR003256 GO:0003735|GO:0005840|GO:0006412
Ssu5g0597 159 SMART kow_9 14 41 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0597 Ssu-Chr5 13546017 13548294 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0597 K02895 - gmx:100499816 309.686