Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0596 ATGCGACGCACTCCTCCCACCATCCATTTCCTCGCTGCCACCGACACCGCCACCTCAATGTCTTCGCTCCCACCcCAACGAGGACGCGGCAGAGGCTTCTCCGGCCGCTCCTACTCCGGCGGCAGAGGCCACTTCGTCACCGGCGACGCGCACTTACGGTCGGTCCGCGACGCCAATTTAGGGCTCCGGCGAGGCGAGAGGGGAAGCTCCGCGAACCAAAGACCGCACCACCAGAATCCGCCTTATAATCCAAGCCCTCATCCGCCGCCTCACCACCACCGGCCTCAGTTCCGTCCGCCTCCGCCGCATTTTCGGCAGCCTCCGCAGCAGTTTCGGCCGCATCCACCGCGGTTTCGGCCGCCTTCGCCGTCTGAACACCGGCCGGCGTTTCGTCCGCCGCCTCATTTTCGGCCGCCGGATTATCGAGACTGGGAGCTTGCCCTGACGCCGCCGCTGCCTCATTGTGAGCGGTTTAAAGTTCTTTCCTATAATATATTGGCTGACTACCTTGCTTTGGACCACCGGAGCAAACTCTATTTTCACATACCTCCATATATATTGGACTGGCAGTGGAGAAAGAGAAGCATAATTTTTGAGCTGGGGTTGTGGTCTGCTGATATCATGTGTTTACAGGAGGTTGATAGATTTCATGAGTTGGCGGAGGAGTTGAAGCCTAAGGGATTCAGTGGCATCTGGAAGATGCGAACAGGTAATCCAGTTGATGGCTGTGCAATCTTTTGGCAAAAATCAAGGTTCAATTTGTTATATGAAGAATGCATTGAGTTTAATAAGCTGGGACTTAGGGATAATGTTGCTCAACTATGTGTACTAGAGTTCATTAATCGAAATGGATCTCGTCCATCcagCTTGACAGGCTCTAGTAAAGTTGTGATTTGTAACATTCATGTGCTTTACAATCCTAATAGGGGAGAAATTAAGCTTGGCCAGGTCCGAGTGCTACTTGATAAGGCTAAAGCTGTTTCTAAACTCTGGAATGATGCCCCTGTAGTTATCTGTGGGGATTTTAATTGTACTCCCAAgAGTCCGTTGTACAACTTTATATCAGAACAGAAGTTAGATCTGTCTGGAATAGATAGGGATAAGGTATCGGGACAAGCTTCTGCTATAATTCGTCCACCAAAGCTCTATGGTCCTAATTCTAGTGAAATATCTGCTAATGGTTCAGTTCAGGTCACATCCACTGAAGGTGACAAGGAAgttattgaacaaaataattctCGGTCGGACACGAGGGACCTGGTCCACCTGGACACTGAATGTAACACTTTGGACAATCAACATACCCAGACCGTTTTGGATATGTCTGTTAAGTCTTGTACAAATGTGGAGTGTGGAAAGGAAAGTGATGTATATGCAGGAAAAGATACTCAGGAAACTGCCGTTGACCATTCTAAGATCTTTTGTGAAGTTGGTAGCATAAAAGAACCTGATCCTTCTTATGGTGAAAGTAGGCTTCATATTGATCATGTAAATGGTGAGATTCATGACATTACACCTGATGCCTCCTCAGCTCCTGAAGCAGTTCACAGTGATCCAACTGGGATGGCCAACAACGAACATATACCAGATGCTGTCCCAACTTCAAATAaagaattattaacaaaatccaACTTACATATCCCTGAAGGGAATAAACATGTAGAGTTTGACTGTTCCTCAACCTCTCTCCAGGAAGACGATCAGTCTTCCAGGGTGAGGATAGATCTTGAGTCAATAGATCTAGACAACGTAGAAATTTCTTCAACTAAACCATCCAGCTATACTTCAGTTTCCAATGCATTTGAAGTCCCTCATACATTGTATGGAGATAGCCCATCTCCTGAGGAAATTGCTAATGATCAAAATATCAGCTCATCAACCTCGTATCTAGTTGACAAATCACATCAATTGTCCAACATTAACTTTCCACTagatgaaaaagagaaatcatTCCTTGATGAGATAGATAAAACCATTATAGGCAGTGAAAATATTGGTGAAGATGACAGCAGTTTCTTATCTGCCTTACATAATGCTGAAGGAGTTGCTGTTGATCTTTGCCCATCAATGAAATCAGATCTTGAAAAGTCATATCAATCTGAGGAATTAGATGCTACTTCCAATAACTTGTTGCTGCCCGTAGAAAGCAATGAAGGGGAGGATGACTTATCTCCAAGTCAGATTTCTAAATCTATTGATACAGAAGAAGCTACTTATAATCCATCATTGTGGACCCCTATGGAGATAGAAACTGCAACAGGAAATGCAGAGTGCACCTTCTTTGAGCACCCTTTACTGCTTAGGAGCACATACACCGAAGCTACGGATTGTTCAGGGACTAGAGACCCCCATGGAGAGCCCCTGGTGACCAGTTATAATAGGCGCTTCTCGGGAACTGTTGACTACATTTGGCGATCTGAAGGTCTTCAAACAATCAGAGTTCTTGCTCCAATGTCTAAACATGCCATGGAATGGACTCCGGGATTCCCAACAAAGGTAAGAAAACTTTATAGTTTTTGTGTGAAAGATTGCAGATGGATGGGGTTTATAAGTGGGTGTTTTGGGACTTTACTTTCACTTGCTGTCATTATGTGTTACCCACATCTCAGACAAGAGGCTATTGTTGTAAGGTTGTGA 2637 0.4456 MRRTPPTIHFLAATDTATSMSSLPPQRGRGRGFSGRSYSGGRGHFVTGDAHLRSVRDANLGLRRGERGSSANQRPHHQNPPYNPSPHPPPHHHRPQFRPPPPHFRQPPQQFRPHPPRFRPPSPSEHRPAFRPPPHFRPPDYRDWELALTPPLPHCERFKVLSYNILADYLALDHRSKLYFHIPPYILDWQWRKRSIIFELGLWSADIMCLQEVDRFHELAEELKPKGFSGIWKMRTGNPVDGCAIFWQKSRFNLLYEECIEFNKLGLRDNVAQLCVLEFINRNGSRPSSLTGSSKVVICNIHVLYNPNRGEIKLGQVRVLLDKAKAVSKLWNDAPVVICGDFNCTPKSPLYNFISEQKLDLSGIDRDKVSGQASAIIRPPKLYGPNSSEISANGSVQVTSTEGDKEVIEQNNSRSDTRDLVHLDTECNTLDNQHTQTVLDMSVKSCTNVECGKESDVYAGKDTQETAVDHSKIFCEVGSIKEPDPSYGESRLHIDHVNGEIHDITPDASSAPEAVHSDPTGMANNEHIPDAVPTSNKELLTKSNLHIPEGNKHVEFDCSSTSLQEDDQSSRVRIDLESIDLDNVEISSTKPSSYTSVSNAFEVPHTLYGDSPSPEEIANDQNISSSTSYLVDKSHQLSNINFPLDEKEKSFLDEIDKTIIGSENIGEDDSSFLSALHNAEGVAVDLCPSMKSDLEKSYQSEELDATSNNLLLPVESNEGEDDLSPSQISKSIDTEEATYNPSLWTPMEIETATGNAECTFFEHPLLLRSTYTEATDCSGTRDPHGEPLVTSYNRRFSGTVDYIWRSEGLQTIRVLAPMSKHAMEWTPGFPTKVRKLYSFCVKDCRWMGFISGCFGTLLSLAVIMCYPHLRQEAIVVRL 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0596 878 MobiDBLite consensus disorder prediction 13 52 - -
Ssu5g0596 878 Pfam Endonuclease/Exonuclease/phosphatase family 161 362 IPR005135 GO:0003824
Ssu5g0596 878 Gene3D Endonuclease/exonuclease/phosphatase 135 444 IPR036691 -
Ssu5g0596 878 Gene3D Endonuclease/exonuclease/phosphatase 698 835 IPR036691 -
Ssu5g0596 878 MobiDBLite consensus disorder prediction 388 415 - -
Ssu5g0596 878 MobiDBLite consensus disorder prediction 64 134 - -
Ssu5g0596 878 MobiDBLite consensus disorder prediction 388 406 - -
Ssu5g0596 878 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 31 832 - -
Ssu5g0596 878 MobiDBLite consensus disorder prediction 100 129 - -
Ssu5g0596 878 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 31 832 - -
Ssu5g0596 878 SUPERFAMILY DNase I-like 149 360 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0596 Ssu-Chr5 13525120 13533805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0596 189 357 EF-hand Containing Proteins AT5G54130 28.333 1.04e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0596 - - gmx:100810446 1175.61