Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0588 atggAGAGGATTCACGTGAGCGTCCGTGCAAGGCCTCTCTCCCCAGATGACTCAAAAACCAGCCCCTGGAGGATCTCCAGCAACTCCATCTCCATTCCCAACCACTCCAAATTTGAATTCGATCAAATATTCAGCGAGAATTGCGAGACCGCGCGAGTCTATGAGGCTCGCACCAAAGATATTGTGGAAGCCGCAGTTCGCGGATTCAACGGCACTGTTTTCGCTTACGGCCAAACTAATAGCGGGAAGACTTACACGATGCGAGGCTCGAAAGCGGAGCCTGGAGTCATTCCTCTCGCGGTCCAtgatttgtttcaaattattcaACAAgatgTGGATCGAGAATTTCTTCTTAGAATGTCTTACATGGAGATTTATAATGAAGAGATAAATGATTTGTTGGCTCCTGAACATCGAAAACTGCAGATTCATGAAAATCTAGAgCGGGGTATATATGTTGCGGGGTTGCGAGAAGAAATTGTTGCCTCTCCTGAGCAAGTCCTTGATCTCATGGAGTTTGGAGAATCTCATAGACATATTGGAGAGACAAATATGAATTTGTACAGTAGCAGGTCCCATACTATTTTCCGCATGATAATTGAGAGTAGGAACAGAACTGAAGATGAAGAAAGTGGCAGCTCTTGTGATGCTGTCCGAGTATCCGTGTTGAATTTAGTGGATCTTGCTGGTTCAGAGCGTGCTGCAAAAACTGGAGCAGAAGGTGTCCGACTCAAAGAAGGTTCTCACATAAACAAAAGCTTAATGACTTTGGGAACTGTGATTAAAAAATTGAGTGAAGGTGCTGAGAGTCAGGGGGGTCATGTTCCATATCGAGATAGCAAGCTGACTCGAATTTTGCAACCTTCTCTAGGAGGAAATGCTAAAACAGCTATAATATGTAATATCTCACTTGCTCAGATACATGCAGATGAAACCAAAAGCAGCCTTCAATTTGCAAGTAGAGCATTGCGTGTTACAAATTGTGCTCAAGTGAATGAGATTTTGACAGATGCTGCTTTGTTAAAGCGTCAAAAGAAAGAGATTGAAGATCTTCGTGCCAAATTGATGGGTTCTCATTCAGAGCATTTGGAACAGGAGATTCTGAACCTTCGAAATACATTATTACAGACTGAACTGGAAAGGGAACGCATAGCTTTGGAATTAGAGGAGGAAAAGAAAGCTCAAGCTGAATGGGAAAAAAGAGTAAAGGAACAAGCCAAGAAAATCGAAAATTTGAGTTCAAtggttttgttttcaaatagGGATGAAAATCATGAGCATATTAAAAAGGACAAGAGGCGGGATACATGGTGTCCAGGAAATCTTTCACGGGAGAATCTAAGAAATGTATGCTCTAGCATCCAACCTAGTGCTTCTACTGTAAAACCCATAAGACCTAAACGAGACATGGGACCACTTCTTCCTTTTGAGGAACTTGTAAGTGAAGATGTTTATGTGGATGAGCCCTTTaagcaagaagaagataatAAAGATGATGCTAACAAGGATTGTAATCTACCAAACCCTTGTGCTTTATTGCATGTAACAAACAGGAAAAAGGCACCATCGCGGAAGAAAAGCTTGTCCATGCAGGAGGATaacaaatttctagaattgCAGGCAGAATATGAGagtttgtttctaaaatttgaaactcAGAGAACTATAAATGAGATACAGATTGAATCATTGAGAAAACAACTAATTGAGGCAATTTCTCTTCATTCTAAAGAATCTATTGACTCTTTAAATTATGCCCATAGTGGTAGCTTGAATgttgataaaaatgtaaattttagagAGTCGGATGCTATTCTTGTTATCAAGAGACTTCAAGAGCagATTAGGGTTTTGGAAATGGAAAACTTATCAAGCCAACAAAGCTTGGATAATGTTGTTGATCTGGCAACGGAGCAGAACATATGTGCTAGGGAGAAATACAAAGAGCTCTATGAAGAGCTTATAAATGCACAGGAGGCAGCTCGATGGGCTAATGAACAACTTACTTCCACTGAAACTGTGAGCAACATTAATGGTGGAAATTTTGACTTTGTGATCAATGTTTCCATGGAAATTCAAGAAATTGTGTCTGaaattcaaaactcaaaagaTGCTGTTCAAAGTGTTACATTTATGGTGGATGATGCTATTAAAAATTTCTCTGCTCTCTGTGATATGCTCCTTGTTTTCAAAACCTCAGTATCTCAGGATTCTGCAGAACAAAGTTTAGTCTTGAGTAATTATCAGAAGTTGAATTCTtgcttaagaaaaaaaatacttgagttTGAGAGTGAGAAGATTCTTCTGGACAACCAATTAGCTGATCTTCAGATGCATCTTCAGGAATCAAAACTAGATGCTCAGAATTCCGAAAATTCTTTGATGGAAAACTTAGAACAAcagaaatttgaaaatgcagAGTTGATTTCTTATATTCAAACTCTTGAAAAGGATTTATCATGTTTGACATCATCTTCAGTGGCCAAGGAAAGCGAAACTTTAAGAAAAGATCTGGAGAAGGCAAAAACCAAGTTGAAAGAAACCGAGTCTAAGCTTAAGATTGCCATACAAGAGAAAACAAAACTTGAGGGTGAGAAAGCGTACGCTGAACGAGAGATTAAACGGTTGCACAGTCAAAACTCTCTTCTTGAACGTGATATCAATAAACGTGATTCGCTTGCGGGAAGAAGACATGATTCAATTGTTGAAAGGGGTTCAAAGATGTTTGATCCTAAAAGACCAAAGGGTCTTGCATTTTCTTTGGAACAAACATTACAGGAAGAGCACAAAAAACTGGAAGTTTTTGCATTTGAATCAGAAACAAGAATTGCTTCGttggaagaagaaataaaagctATATTGAAGGAGAAAGAAGTGGTGATATCTATTAATGAAGGTTTGACATCAGAATTGGAAGGCTTGACTGAAAAACTGAATACATCAACCTCTGAGCTATATAATTTGAAGGAGGAAATTTCAGCTCTTAAACAAAGATTGGAAGAATTTGATATGAAccaagaaaaattgaaaagctCTATCAAAGTACTGATGGAAGAAAAGGAGGAGTTGGCTATGCAACTCACTGATTCCCTTTTGGAAATAGAGGAGGAAAGGGCAATATGGTCTGCCAAAGAGAAAGCTGCACTTCTAGCCATAGAAGAACAAGCAAAGTCAAACAATATGCAAATTACATCATTATCGACAACATTATTAGAAgTAAGGAATCAGTTGGAATCTTGTAGAGAAGAATGCAGGACCCTACAGGAAAGATTGACTATTACATATGAAAATGCACATATCAAGGAAAATTTCAGGGAAGAGGTTTTAGAGTTGGATCAACTGGAAAATCACCTTGAAAAAACTGATGCTGAGAGCAAACAATCCCAAATGTCAAAAGGCAATTTTGAGATGCTATCTCTGGAGCATGAGCTGCATGACTGTCCCGAGGAACAGAAAGCAAATGAACTTCAGAGGGAACTACATGTTCTTGATAAAGGGGATGACCTATCATGCCCGAAAGTGTGTCAGAATCTCAAGAACAAACTATCTGTTGTGacaaaagaaaaggacaaaTTGACGATTGAGATGGAAGAAGAAcagaaaaaaatggaatttcTGCGAAAGGATTGTCAGGATGAGTTATCGAAGGCAAAGGTCCATGTTGAGGAACTGAGTCGGAAACTTTCCTCTATTGAAGTCAAAATGCATGCGGATGGCGTAACAAACAACAAAGAGATGGCTAAGCTCAGAATGAGACTCCGCGGAACACAAGCAAAGCTAGATGCTTTCCGTTGTAGATATAAGGAAGCAATCGATGAATCAGTtttaatgaataagaagtaCAAAGATCAGTTGGCTAAAAAAGGAATAGAAGTGCTGAACCTAATGCAACAGCTAGCTGCTGCCAAAAAGCAATAG 3918 0.3688 MERIHVSVRARPLSPDDSKTSPWRISSNSISIPNHSKFEFDQIFSENCETARVYEARTKDIVEAAVRGFNGTVFAYGQTNSGKTYTMRGSKAEPGVIPLAVHDLFQIIQQDVDREFLLRMSYMEIYNEEINDLLAPEHRKLQIHENLERGIYVAGLREEIVASPEQVLDLMEFGESHRHIGETNMNLYSSRSHTIFRMIIESRNRTEDEESGSSCDAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGTVIKKLSEGAESQGGHVPYRDSKLTRILQPSLGGNAKTAIICNISLAQIHADETKSSLQFASRALRVTNCAQVNEILTDAALLKRQKKEIEDLRAKLMGSHSEHLEQEILNLRNTLLQTELERERIALELEEEKKAQAEWEKRVKEQAKKIENLSSMVLFSNRDENHEHIKKDKRRDTWCPGNLSRENLRNVCSSIQPSASTVKPIRPKRDMGPLLPFEELVSEDVYVDEPFKQEEDNKDDANKDCNLPNPCALLHVTNRKKAPSRKKSLSMQEDNKFLELQAEYESLFLKFETQRTINEIQIESLRKQLIEAISLHSKESIDSLNYAHSGSLNVDKNVNFRESDAILVIKRLQEQIRVLEMENLSSQQSLDNVVDLATEQNICAREKYKELYEELINAQEAARWANEQLTSTETVSNINGGNFDFVINVSMEIQEIVSEIQNSKDAVQSVTFMVDDAIKNFSALCDMLLVFKTSVSQDSAEQSLVLSNYQKLNSCLRKKILEFESEKILLDNQLADLQMHLQESKLDAQNSENSLMENLEQQKFENAELISYIQTLEKDLSCLTSSSVAKESETLRKDLEKAKTKLKETESKLKIAIQEKTKLEGEKAYAEREIKRLHSQNSLLERDINKRDSLAGRRHDSIVERGSKMFDPKRPKGLAFSLEQTLQEEHKKLEVFAFESETRIASLEEEIKAILKEKEVVISINEGLTSELEGLTEKLNTSTSELYNLKEEISALKQRLEEFDMNQEKLKSSIKVLMEEKEELAMQLTDSLLEIEEERAIWSAKEKAALLAIEEQAKSNNMQITSLSTTLLEVRNQLESCREECRTLQERLTITYENAHIKENFREEVLELDQLENHLEKTDAESKQSQMSKGNFEMLSLEHELHDCPEEQKANELQRELHVLDKGDDLSCPKVCQNLKNKLSVVTKEKDKLTIEMEEEQKKMEFLRKDCQDELSKAKVHVEELSRKLSSIEVKMHADGVTNNKEMAKLRMRLRGTQAKLDAFRCRYKEAIDESVLMNKKYKDQLAKKGIEVLNLMQQLAAAKKQ 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0588 1305 Coils Coil 608 628 - -
Ssu5g0588 1305 Coils Coil 964 1037 - -
Ssu5g0588 1305 Pfam Kinesin motor domain 27 323 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0588 1305 ProSiteProfiles Kinesin motor domain profile. 3 325 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0588 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 356 IPR027417 -
Ssu5g0588 1305 PANTHER CENTROMERE PROTEIN E 1 701 - -
Ssu5g0588 1305 MobiDBLite consensus disorder prediction 1 25 - -
Ssu5g0588 1305 Coils Coil 331 415 - -
Ssu5g0588 1305 Gene3D Kinesin motor domain 1 356 IPR036961 -
Ssu5g0588 1305 PANTHER KINESIN-LIKE PROTEIN KIN-7O 1 701 - -
Ssu5g0588 1305 PRINTS Kinesin heavy chain signature 68 89 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0588 1305 PRINTS Kinesin heavy chain signature 222 240 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0588 1305 PRINTS Kinesin heavy chain signature 275 296 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0588 1305 PRINTS Kinesin heavy chain signature 183 200 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0588 1305 Coils Coil 1104 1131 - -
Ssu5g0588 1305 Coils Coil 936 956 - -
Ssu5g0588 1305 ProSitePatterns Kinesin motor domain signature. 221 232 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu5g0588 1305 Coils Coil 828 886 - -
Ssu5g0588 1305 Coils Coil 1063 1090 - -
Ssu5g0588 1305 SMART kinesin_4 1 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0588 1305 Coils Coil 1175 1234 - -
Ssu5g0588 1305 Coils Coil 633 667 - -
Ssu5g0588 1305 CDD KISc_CENP_E 4 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0588 Ssu-Chr5 13282839 13315735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0588 2 421 Miscellaneous Gene Families AT5G06670 42.890 2.76e-97 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0588 K11498 - gmx:100813718 2154.79