Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0584 atgagAAGAATCTGGAATCTCCTCTCTAAATCGAAACAACTCGCTGCATTTGCAAGCCCAGCCTCCAAGTTCCGTGTCAATGCGGTTCGCTCTTATTTCGATCAAGCGCACGTTCGCCGTCAAAACCGTCCAGGGCCCCTTGTGCAGTACAGAAGTCTAGTTGATCAAGGGAAGTTGCGGCACGATCCGTACCAAGAGAGTGTTGCTTCGGAGCTTGAGAATTTGCTTGCAAGGTTGGAGCAGTATGAGAAACATATGGAAGAATATCATGTGAATCTAGCTAATTGGGAGAAGCAGCGGGAGAATGAGCGGCGAAGGCTTCTCATGGAGGAAGTTGGGCTGCAGCAGAAGGACGAGGACTGGTGGAAGCGGTTGAACAATAAGCTTACTGAAAGATGGGCATCCCGGAAAAGACCAGCAAATATGGAGCCAGGTGTAGGGAAATGGGTATCATATCTTAAACATGAGAAGAAGTTGGATTCATTAGTTGGTCGCCGTCCAACTGCTCCTCCAGCTCCTAAAGGAATTTACATATATGGCAATGTCGGCAGTGGGAAGACAATGCTGATGGACATGTTTTATAGTGCCACTGAAGGAATTGTCAGACATCGAAGAAGGTATCACTTTCATGAGGCCATGCTTAGAATTAATGAACATATGCACAAGATATGGAAGAACCACATAGAAGAGAAGCCTTTGCAATCGACCATTGCTGGTTGGATTATGAGTCTTCCATTTGACACAAAAGCTAAGGAGTGGCTGGCTGCTgaagaaagatacaagcaaGAGGTACAGATGAAAAACATTCTTCCTGCTGTAGCAGATATGTTTTTCCTGGATGGAGAAGAGAATGAAAAGGGAGCCAGCATTTTGTGCTTTGATGAGATACAGACTGTTGATGTATTTGCTATTGTGGCTTTATCTGGAATTCTAAGCAGATTGCTGAGTAGTGGAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACTTAAACGAGGCTGGTATGCAAAAGGAAATCTTCTTGAAACTTGTCTCCAAATTGGAAGAACATTGTGAGAAGGTATTGATAGGGAGTGAAATTGACTACCGTTGTTTTATAGCACAAAAATCAGAAAACCAGGTGCACTATTTCTGGCCTATTGAAAAGGAAGCAATCaatgaatttgagaaaaagtGGCATGATGTAACAGGCCGATTGGGAGGAAGAATAATCTCCAACACCATCCCAGTGATGTTTGGAAGGACGCTTGAGGTTCCTGAAAGATGTGATGGAGTTGCACGCTTCACATTTGAGTATCTCTGCAGTCGTCCGttgGGTGCAGCAGATTATATTGCAGTAGCTGAAAACTTTCACACTGTTTTCATATCTGATATTCCAGTAATGAGTATGCGCATACGTGACAAGGCACGGAGATTTATCACCCTTATTGATGAGTTATACAATCATCATTGCTGCTTGTGTTGTTTGGCATCCTCTTCAATTGATGAATTATTTCAAGGAACTGAGGAGGGCACACTTTTTGACTTGGAAAGTTTCCAGTTTGAAACAGAGACTGAAGGTGGGAAACTTCGCCGCAATGTCTTGGCAGAAGGCACGGTGGGCTCAGGAGGTGCCCCATCTGGTATCACATCCATACTATCTGGTCAAGAAGAGATGTTTGCTTTTCAAAGAGCTGTCTCACGCCTGATTGAAATGCAAACCCCATTATACTTGGATGGAGTCAGTAATTTCCACCCTTATTTTCAGAGGCAACATAAAAAGTTACAACAATTGTGA 1782 0.4276 MRRIWNLLSKSKQLAAFASPASKFRVNAVRSYFDQAHVRRQNRPGPLVQYRSLVDQGKLRHDPYQESVASELENLLARLEQYEKHMEEYHVNLANWEKQRENERRRLLMEEVGLQQKDEDWWKRLNNKLTERWASRKRPANMEPGVGKWVSYLKHEKKLDSLVGRRPTAPPAPKGIYIYGNVGSGKTMLMDMFYSATEGIVRHRRRYHFHEAMLRINEHMHKIWKNHIEEKPLQSTIAGWIMSLPFDTKAKEWLAAEERYKQEVQMKNILPAVADMFFLDGEENEKGASILCFDEIQTVDVFAIVALSGILSRLLSSGTIIVATSNRAPKDLNEAGMQKEIFLKLVSKLEEHCEKVLIGSEIDYRCFIAQKSENQVHYFWPIEKEAINEFEKKWHDVTGRLGGRIISNTIPVMFGRTLEVPERCDGVARFTFEYLCSRPLGAADYIAVAENFHTVFISDIPVMSMRIRDKARRFITLIDELYNHHCCLCCLASSSIDELFQGTEEGTLFDLESFQFETETEGGKLRRNVLAEGTVGSGGAPSGITSILSGQEEMFAFQRAVSRLIEMQTPLYLDGVSNFHPYFQRQHKKLQQL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0584 593 PANTHER ATPASE N2B 37 592 IPR005654 GO:0005524|GO:0016887
Ssu5g0584 593 Coils Coil 65 106 - -
Ssu5g0584 593 Gene3D - 165 365 IPR027417 -
Ssu5g0584 593 PANTHER AFG1-LIKE ATPASE FAMILY PROTEIN 37 592 - -
Ssu5g0584 593 Pfam AFG1-like ATPase 158 504 IPR005654 GO:0005524|GO:0016887
Ssu5g0584 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 352 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0584 Ssu-Chr5 12939657 12963367 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0584 - - mtr:MTR_1g012370 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0584 5 12939657 12963367 Ssu5g0584 5 12939657 12963367 ECH