Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0583 ATGCAATTAACCAAGCTTTCATCTGCTGCAACCGcactcaccaccaccaccaccacctcccgGCTCCAAGTCCAACTCCCTCCACACACCACGAAACGACGCGTCGCAGAGCAAACCTGCTTGGCTCTCCTCCACACGTGCAACACCCTCGCCACCCTCACGCAAATCCACACCCTCATCCTCAAACTCGGTCTCCAGCACAACCCTCTCGTCCTCACCAAGTTCGCCTCCACCTCCTCCCACTTCGGCGCCGTTCACTACGCCTCCTCCTTCCTCTTCCCCGATGAAGAAACCACCCCTCACCCCTCGCGCGACGCCTTCCTCTTCAACACCCTCATCAGGGCCTTCGCCCAAACGACAGACTCCAAGCCCGGCGCCCTGCGTTTCTACCGAACCATGCTCCGACACGCCGTTTCGCCCAACAAGTTCACCTTCCCGTTCGTCCTCAAGGCTTGCGCCGGCCTCGCGAGTTTGCCGCTCGGGAAAGCGGTGCACTCCTCGGTGGTGAAGTTCGGTTTCGAAGACGACCTTCACGTGCGGAACACCATGATTCACATGTACTGCTGCTGCGAGGAAGGGTCCGAGCCTGAGTCTGCTAAGAAGGTGTTCGATGAAAGTACTGAGCGGGATTCGGTGACGTGGAGCGCCATCATTGGAGGGTACGCACGTGCGGGAAATTCTGCACGTGCGGTTATGTTGTTTAGAGAGATGCAGGTTACAGGGGTGTATCCTGACGAGATCACTATGGTTTCGGTTTTGTCTGCTTGTGCTGATTTGGGTGCACTCGAATTAGGGAAGTGGTTGGAATCTTATGTTGAGAGAATGAACATAACGAAGTCTGTGGAGTTGTGTAACGCGCTGATAGACATGTTTGCGAAGTGTGGTGATGTTGATAGAGCTGTGAAATTTTTCAGGAAAATGAAAGTGAGGACCATAGTTTCGTGGACTTCGGTGATTGTCGGGTTGGCGATGCACGGTTGCGGATTGGAGGCCGTTTCAGTTTTTGACGAGATGGTGGAACAAGGGGTGGAGCCTGATGATGTTGCTTTCATTGGGGTGCTTTCTGCGTGTAGTCACTCGGGGCTGGTTGATAAGGGGCGGCACTATTTCAATACAATGGAGAATAGGTTCAGCATTGTGCCGAAGATTGAACACTATGGATGCGTGGTTGATATGTTGAGTAGAGCAGGGCTTGTCAATGAGGCTTTGGAGTTTGTTCGAGCCATGCCGGTTGAGCCAAACCAGGTCATATGGAGAAGCATAGTCACTGCTTGCCATGCCCGTGGCGAACTCAGGCTCGGTGAGAGCATGGCAAAGGAGCTAATCAGGCGCGAGCCGATGCACGAGTCTAACTACGTGCTGCTGTCAAACGTTTACGCGAAATTGCTGCGCTGGGAGAAGAAGACCAAGGTTAGGGAGATGATGGATGTGAAGGGGATGAAGAAGATTCCAGGGAGCACCATGATTGAGatgaataatgaaatatatgagTTTGTTGCCGGGGATAAGTCACATGATCAGTACAAGGAGATATATGAAATGGTGGGGGAGATAGGAAGGGAAATAAAGAGAGCAGGGTATGTGCCTACAACGTCACAGGTGTTGCTTGACattgatgaagaagataaaGAAGATGCTTTGTATAGACACAGTGAAAAGCTTGCTATAGCTTTTGCTCTTCTGAGCACACCCCCTGGAACACCAATTAGAATTGTGAAGAACTTGCGCGTCTGTGAAGATTGTCACTCTGCTACCAAGTTCATATCCAAGGTTTATAACCGAGAGATTGTGGTGAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGCTTGTGCTCCTGCGGAGACTTCTGGTAA 1857 0.5013 MQLTKLSSAATALTTTTTTSRLQVQLPPHTTKRRVAEQTCLALLHTCNTLATLTQIHTLILKLGLQHNPLVLTKFASTSSHFGAVHYASSFLFPDEETTPHPSRDAFLFNTLIRAFAQTTDSKPGALRFYRTMLRHAVSPNKFTFPFVLKACAGLASLPLGKAVHSSVVKFGFEDDLHVRNTMIHMYCCCEEGSEPESAKKVFDESTERDSVTWSAIIGGYARAGNSARAVMLFREMQVTGVYPDEITMVSVLSACADLGALELGKWLESYVERMNITKSVELCNALIDMFAKCGDVDRAVKFFRKMKVRTIVSWTSVIVGLAMHGCGLEAVSVFDEMVEQGVEPDDVAFIGVLSACSHSGLVDKGRHYFNTMENRFSIVPKIEHYGCVVDMLSRAGLVNEALEFVRAMPVEPNQVIWRSIVTACHARGELRLGESMAKELIRREPMHESNYVLLSNVYAKLLRWEKKTKVREMMDVKGMKKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVGEIGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0583 618 Pfam PPR repeat 284 310 IPR002885 -
Ssu5g0583 618 Pfam PPR repeat 385 409 IPR002885 -
Ssu5g0583 618 Pfam DYW family of nucleic acid deaminases 526 618 IPR032867 GO:0008270
Ssu5g0583 618 Pfam E+ motif 495 522 IPR046849 -
Ssu5g0583 618 TIGRFAM PPR: pentatricopeptide repeat domain 283 309 IPR002885 -
Ssu5g0583 618 TIGRFAM PPR: pentatricopeptide repeat domain 313 346 IPR002885 -
Ssu5g0583 618 TIGRFAM PPR: pentatricopeptide repeat domain 212 246 IPR002885 -
Ssu5g0583 618 Gene3D Tetratricopeptide repeat domain 121 276 IPR011990 GO:0005515
Ssu5g0583 618 Gene3D Tetratricopeptide repeat domain 327 500 IPR011990 GO:0005515
Ssu5g0583 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Ssu5g0583 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Ssu5g0583 618 Pfam E motif 430 490 IPR046848 -
Ssu5g0583 618 Pfam PPR repeat family 210 257 IPR002885 -
Ssu5g0583 618 Pfam PPR repeat family 311 358 IPR002885 -
Ssu5g0583 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 140 IPR002885 -
Ssu5g0583 618 PANTHER - 38 604 - -
Ssu5g0583 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 310 IPR002885 -
Ssu5g0583 618 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0583 Ssu-Chr5 12932265 12934702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0583 109 618 Glycoside Hydrolase AT3G49170 38.058 2.54e-129 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0583 - - gmx:100778415 1075.08