Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0571 ATGAATAAGAGCaaaattggaaaagataaaGAAGCATCTTCTACTGTTTCAAATGGTACTTCAGCTTCAGACTCTCGCCCAAGACAGCCTATTAAAAGCAGATCATTCAACGACAGGCAAACACAATTGTCCAAGCACCCTTCAAAGTCTGATGCAGCATCTTCTGAAGTATCGGTGGAGAAGACAAAACCAAAATCATTGAAAAATGGACCCCTTGATAAAGTTCAAGGAGAAGCAGAATCTTCCTTAAGTACCAACACAGAAGATGCCAAAGCTCGAAGGGTGGGGACACTTCCAAATTATGGATTCAGTTTTAGGTGTGGTGAACGAGCTGAGAGAAGAAAAGAGTTCTACAATAAGCTTGAGGAAAGGATTCAAGCAAAGGAAGTGGAGAAGAGTAACATGCAAGCAAAAACCAAGGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAGGAGTCTAACATTTAAAGCAACTCCAATGCCAAATTTTTACCAGGAGCCTCCTCCTCCTAAGGTGGAGCTAAAGAagATACCAACTACTAGAGCAAAATCACCCAAGCTCGGTCGTAAGAAGGGTTCAGTAAATTCAGAGTCAGATGGAAACACTAGCAGCAGTTCCCGACAAGCTCGTTTAAGTCTGGATGAGAAAGTGTCAGAGAGTAACCCCACTAAGGGACCTACCCCTCCTGTCCACCAAAAGAAGCCGCAACGAAAATCTCTTCCTCCTCGGCTTGCTTCTGAAAGGAACAGTTTATCAAATTCCACAAATGCACCAACATCATCCAAGGCTATCAAAGATGAAAAGTCTTCCGTATCTAGTGCTGCTAAAAAGATACCAACTCATCCAATGCTacagaagagaaaacaaagccAATTGCAGCAAATGAAGAGAAAGGTACCTTCTCCAGTGAGACAAGTGATGCTGTGCCTCTGA 936 0.4156 MNKSKIGKDKEASSTVSNGTSASDSRPRQPIKSRSFNDRQTQLSKHPSKSDAASSEVSVEKTKPKSLKNGPLDKVQGEAESSLSTNTEDAKARRVGTLPNYGFSFRCGERAERRKEFYNKLEERIQAKEVEKSNMQAKTKETQEAEIKMLRRSLTFKATPMPNFYQEPPPPKVELKKIPTTRAKSPKLGRKKGSVNSESDGNTSSSSRQARLSLDEKVSESNPTKGPTPPVHQKKPQRKSLPPRLASERNSLSNSTNAPTSSKAIKDEKSSVSSAAKKIPTHPMLQKRKQSQLQQMKRKVPSPVRQVMLCL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0571 311 MobiDBLite consensus disorder prediction 151 304 - -
Ssu5g0571 311 PANTHER PROTEIN WVD2-LIKE 4 1 298 IPR044833 GO:0008017
Ssu5g0571 311 Pfam Targeting protein for Xklp2 (TPX2) domain 103 173 IPR027329 -
Ssu5g0571 311 Coils Coil 118 138 - -
Ssu5g0571 311 MobiDBLite consensus disorder prediction 195 228 - -
Ssu5g0571 311 MobiDBLite consensus disorder prediction 285 299 - -
Ssu5g0571 311 PANTHER PROTEIN WVD2-LIKE 5-RELATED 1 298 - -
Ssu5g0571 311 MobiDBLite consensus disorder prediction 244 277 - -
Ssu5g0571 311 MobiDBLite consensus disorder prediction 1 103 - -
Ssu5g0571 311 MobiDBLite consensus disorder prediction 11 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0571 Ssu-Chr5 12605157 12608522 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0571 - - gmx:100786958 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0571 5 12605157 12608522 Ssu5g0571 5 12605157 12608522 ECH