Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0566 ATGCAGAATCCAACATCAGAACGCGCAGCCACGTTTCCAACGCACCCGAAAAACCAAACATTGATGTTAGAGAAGAACCCAcattcaacaaaaagcaaaaaaataaataaaaaagcaaaattaaCAATGCTATTATCTCCCAACCCATTCTCTCTTCTTTGCGCACTTCTTCTCTGCTTACCGCTAGCCTTATTCTTCACCGCCAACACCAAACACACCGCAACCACTATCACCAGCCCCATCATCCTTAACATACCAATGTCACTCCCCAAAAACATTAGCGTCACCGAAAAGCCCAACAAGAAACCACagcaaccaccaccaccaaagaACCACGATGACAAAGCAAAGCCCACTAGGCCCAACAAAAAACCACCACAGTCACCACCGCCGCCAGAAAACCAAGACGATGCGCTATTCAAAATGGCCACACGCATGAAAGCAAGGCCCACTAGGCCCAACAAAGTAGCGTTCATGTTCATAACCACCACACCACTCCCATTCGCGCCACTATGGGAATCTTACTTCACCCAAAACCCAACTACAAAGAATCTCTTCAATATTTACATCCACTCTGACCCCACTTTTTCCTACCACCCACCTTTCTCAGGCGCGTTCCACAACCGCGtgattccttcaaaacccacgAAAAGATTCTCCCCCACGCTTGCCGCCGCCGCGCGTCGCTTACTCGCGCACGCGCTCCTCCACGACGCTTCCAATTCCATGTTCGTGCTGCTCTCTCCCTCGTGCATCCCCCTCCACTCGCTTAACTTCACCTACCACGCCCTCGTACGCGCCGGCAAGAGCTTCATCGAGATTCTCGCCAATGAGACCACTGCTTTCGACCGTTGGGCCGCGCGTGGACCACACGCGATGCTCCCGGAGGTGAGGCTCGAGGATTTCCGCGTAGGGTCGCAGTTTTGGGCGCTGACACGTCAGCACGCGAGGCTCGTTGTCAATGACCGCGTGCTGTGGCCGAAGTTCAACGCGCCGTGCGTGCGGCGCTACACGTGCTACCCCGAGGAGAATTACTTTCCTACCCTTTTGAACATGTGGGACCCGCGAGGGTGCGTGCCAGCCACGCTCACGCACGTGGATTGGACGGGGAGCGTGGATGGGCATCCTCGCACGTACGAAGCGTGGGAAGTGGGGCCCGACCTGATTCGGAGGATGAGGAAGGATAGGCCTAGGTACGGTGACGGTGACGGTGACGGTGACGGTGATGGACGAAGGGATCCGTTTTTGTTTGCGAGGAAGTTCGCCGCGGACGCGTTGCAACCGTTGATGAGAATTGCGAACGACGTCATCTTCAACGATTGA 1323 0.5193 MQNPTSERAATFPTHPKNQTLMLEKNPHSTKSKKINKKAKLTMLLSPNPFSLLCALLLCLPLALFFTANTKHTATTITSPIILNIPMSLPKNISVTEKPNKKPQQPPPPKNHDDKAKPTRPNKKPPQSPPPPENQDDALFKMATRMKARPTRPNKVAFMFITTTPLPFAPLWESYFTQNPTTKNLFNIYIHSDPTFSYHPPFSGAFHNRVIPSKPTKRFSPTLAAAARRLLAHALLHDASNSMFVLLSPSCIPLHSLNFTYHALVRAGKSFIEILANETTAFDRWAARGPHAMLPEVRLEDFRVGSQFWALTRQHARLVVNDRVLWPKFNAPCVRRYTCYPEENYFPTLLNMWDPRGCVPATLTHVDWTGSVDGHPRTYEAWEVGPDLIRRMRKDRPRYGDGDGDGDGDGRRDPFLFARKFAADALQPLMRIANDVIFND 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0566 440 MobiDBLite consensus disorder prediction 107 121 - -
Ssu5g0566 440 Pfam Core-2/I-Branching enzyme 156 393 IPR003406 GO:0016020|GO:0016757
Ssu5g0566 440 MobiDBLite consensus disorder prediction 1 26 - -
Ssu5g0566 440 PANTHER CORE-2/I-BRANCHING ENZYME 45 440 - -
Ssu5g0566 440 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 45 440 IPR044174 GO:0016757
Ssu5g0566 440 MobiDBLite consensus disorder prediction 1 33 - -
Ssu5g0566 440 MobiDBLite consensus disorder prediction 93 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0566 Ssu-Chr5 12527575 12528897 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0566 - - gmx:100788566 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0566 5 12527575 12528897 Ssu5g0566 5 12527575 12528897 ECH