Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0561 ATGGCTTTCTCCGTTTCCCTTCGCACTACCTCTTCTCCGTGTTACTCACAGTTGTTTTGCTCTGTTAGGTTCAATAGGAGGCACCGTAATAGCCGAGTAGGTTTCGTGTCGAACGGCGGAAGACGATGTCGTCGTTTACGGAACAGTGTTAGCATTAGCGTTAGGTCGGTGTTGAACGACAATAGGCCTAGCGTTAACGATTATGGAGCGGCTGAGTCCGCTAGGGTTTTGCTCGAGAGGTTGTTCGAGCAGACGCAGAACCGGATTACCGGATCGGAACTGGATCTTCGGGTTCTGGAATCGGGTCTCGCGGCGGCGCTGGCGGCgttgaagaagaaggaggatCACTTGATGGAAGTGGAGAGGACGGTGTTGTTGGAGAATAGTAAATTGAAGCACACGAGGGAGGAATTGGAGCGGCAAGAGAGTGAAATTGAGGCTGCTAGGGTTGAGTATGAGAAGCTCGAGGAGGAAATGAAGGAGACTACTGTTAAATTGGTGTCTCAGGCGAGCCAGATTGAGGAGCTGAAGCTTAGGGTTAGGGATTCCGATCACGAGATCGACGCAGTCCGGTATGCGCTGAGGTTGAAGGAGGGGGAAGTGGAGAAGATGAGGGTTGAATTGGAGGTGAAGAGTCAGGAGGCTGTGGTTTCTGATAATGAGCTTAGGGAGAAGGGGAGGATTTTGGATGAAGCCAATGAGGTTTTGAAGAAACAAGAGGCTGAGCTTGAGGAGCTGAGGAGGGCGGTtcgagagaaagaggaggagatTGAGGTTTTCTTGGCTCAGAGGGAGGATGAGAGGGAGAAGCTGAGGGTTGCTGAGGTGAATTTGGAGAAGCAGGCGATGGATTGGTTGTTGGCGCAGGAGGAGCTTAAGAGGCTGGGAGAGGATGCTGCGAGGCACGCCGAGGAGAGTAGTGAGACGCTGGAGGATTTCAGAAGGGTGAAGAAGCTTCTCAATGATGTGAGGTCTGAGTTGGTTTCATCTCAGCAAGCGTTGGCGTCTTCTAGAAGCAAAATGGAGGAGCAGGAGCGGTTGCTGGAGCAGCAGCTGAGTGAGCTTGCAGAGCAAAGGGGAAGTGTCATGTCTTACATGGAAAATTTGAAGGGTGCGCAGATAGAAGTGGAGAGTGAGAGAACAAAACTTAGGGTTGCAGAGGGGCGGAACAAGGAGCTTGAACGGGATCTGAAGATGGAAAAGGAGCTTATTAATGAGTTAGAGGAGGAGCTGAAGAAAGAGAGAACTTCTTTGGAGCAGGCAGTCAAAGAAATGGCTTTGCTTCAAGAGGAATTGGAGAGAAAAAGTGCTGAATTTAGAGAAACAAGTGCTATTCTAGAGGTCAAAGAGTCAGAGCTTGTTGATGCTAAGCTAGAAATCCAgcgtttgaaatttgaaaaggcTTCTCTTCAGGGTATCTTGGAGGAGAAAGACTTGGAGCTTTCTAATGCTAGGAAGATGCTGGTGCAAGTTAACCAGGAAATCTCTGATCTTAAGATGCTTATGACCAGTAAAGAAACCCAGCTCATTGAAGCAACCAATATGCTAAGGGAGAAAGATGAGCATGTGAAGATAATCCAGAACAAGTTGAATAATACAAACCAGAAGGCTTTTGAGGCTGAAACGGTGGTAGAAAGAATTTTAGATCTCACAAACAAACTGGTTGCTTCCATTAAGGATGAAGACATCAACTCATCAAGACCACTACTAGATGGAATGGGTAATCAACTAGTCGAGCAACTAATGGAGGAACCTGCTAATGAATTGAGATGGCAACAAAAAAGATTTGAGAGTGAGCTTGGGTTGGCCAAGGAAAGCTTAAAAGAAAAGGAGCTTGAAGTTCTTGCTGCACAGAGGGCTCTAACAATAAAAGATGAGGAGCTGAAAATGACTCTCGCAAGATTGGATGCAAAAGAGGAAGAGTTAAAAAAAGTAAGGGAAGAGGTGACCGAAGACTCTGCTGATCTTAAAAGGCTGTATGCTTTGGCACAGGAGAGAATTGGTGATAAAAGCTTAGGAGATTTGGCAATTGAGAAACTTCAGCTTGAGGCAGCTCAGCTTGAAGTTGAAGCTGCCACCAATGCACTACAAAAACTTGCCGATATGAGTCGACAACTTCTGAATAAGGCTATCCTGAGTGTTGAAGCTGATAACTATATCAGTATCATGCAAAGTAATGATATAATTCCCGATTCAATCACAGATATCAGTAACTCTGACTGTTTCACTGAGGTAAAAGCAGGAGTTGCTCGACTCTCAGCTTTGACTGAGCAGCTTGTGATGGAGGCGGGTGTTGTTGCTGCAAACTAA 2310 0.4545 MAFSVSLRTTSSPCYSQLFCSVRFNRRHRNSRVGFVSNGGRRCRRLRNSVSISVRSVLNDNRPSVNDYGAAESARVLLERLFEQTQNRITGSELDLRVLESGLAAALAALKKKEDHLMEVERTVLLENSKLKHTREELERQESEIEAARVEYEKLEEEMKETTVKLVSQASQIEELKLRVRDSDHEIDAVRYALRLKEGEVEKMRVELEVKSQEAVVSDNELREKGRILDEANEVLKKQEAELEELRRAVREKEEEIEVFLAQREDEREKLRVAEVNLEKQAMDWLLAQEELKRLGEDAARHAEESSETLEDFRRVKKLLNDVRSELVSSQQALASSRSKMEEQERLLEQQLSELAEQRGSVMSYMENLKGAQIEVESERTKLRVAEGRNKELERDLKMEKELINELEEELKKERTSLEQAVKEMALLQEELERKSAEFRETSAILEVKESELVDAKLEIQRLKFEKASLQGILEEKDLELSNARKMLVQVNQEISDLKMLMTSKETQLIEATNMLREKDEHVKIIQNKLNNTNQKAFEAETVVERILDLTNKLVASIKDEDINSSRPLLDGMGNQLVEQLMEEPANELRWQQKRFESELGLAKESLKEKELEVLAAQRALTIKDEELKMTLARLDAKEEELKKVREEVTEDSADLKRLYALAQERIGDKSLGDLAIEKLQLEAAQLEVEAATNALQKLADMSRQLLNKAILSVEADNYISIMQSNDIIPDSITDISNSDCFTEVKAGVARLSALTEQLVMEAGVVAAN 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0561 769 Coils Coil 334 361 - -
Ssu5g0561 769 Coils Coil 675 709 - -
Ssu5g0561 769 Coils Coil 103 172 - -
Ssu5g0561 769 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 35 765 - -
Ssu5g0561 769 Coils Coil 516 536 - -
Ssu5g0561 769 Coils Coil 376 438 - -
Ssu5g0561 769 Coils Coil 446 466 - -
Ssu5g0561 769 Coils Coil 474 501 - -
Ssu5g0561 769 Coils Coil 628 666 - -
Ssu5g0561 769 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 35 765 - -
Ssu5g0561 769 Coils Coil 222 281 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0561 - - gmx:100789623 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0561 5 12405676 12408199 Ssu5g0561 5 12405676 12408199 ECH