Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0559 ATGGCTTCCAACAAGCTCATTGCCACCTTCTTAGTGCTTTCTCTCCTTGCCTACTCAACATTCACCAATGCATGTGGCACATGCAATCCCAAgccttctcctcctcctccatctGGGAAGTGCCCCAAGGACACATTGAAGCTAGGGGTTTGTGCTGACATTCTAGGACTTGTTAATGTTGTTGTTGGGTCCCCTGCCTCTAGCAAGTGTTGTGCATTGCTTCTGGGTTTGGTTGATTTGGAGGCTGCACTTTGCCTATGCACTGCTATTAAGGCCAATGTCCTTGGAATCAACTTGAATGTGCCCGTCACACTCAGTGTGCTACTTAGTGCTTGCCAAAAAACTGTTCCACCTGGTTTCCAATGTCCATAG 372 0.4462 MASNKLIATFLVLSLLAYSTFTNACGTCNPKPSPPPPSGKCPKDTLKLGVCADILGLVNVVVGSPASSKCCALLLGLVDLEAALCLCTAIKANVLGINLNVPVTLSVLLSACQKTVPPGFQCP 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0559 123 PANTHER LIPID TRANSFER PROTEIN 28 123 - -
Ssu5g0559 123 SMART aai_6 41 122 IPR016140 -
Ssu5g0559 123 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 44 123 IPR036312 -
Ssu5g0559 123 PANTHER - 28 123 - -
Ssu5g0559 123 PANTHER - 1 25 - -
Ssu5g0559 123 Gene3D - 39 123 IPR036312 -
Ssu5g0559 123 PANTHER LIPID TRANSFER PROTEIN 1 25 - -
Ssu5g0559 123 CDD HPS_like 44 122 IPR027923 -
Ssu5g0559 123 Pfam Hydrophobic seed protein 41 123 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0559 Ssu-Chr5 12340948 12341319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0559 32 123 Acyl Lipid Metabolism Gene Families AT4G22490 38.043 2.54e-18 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0559 - - gmx:547594 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0559 5 12340948 12341319 Ssu5g0559 5 12340948 12341319 ECH