Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0557 ATGAATACCGTTTGTTGGCCTTACTTTGATCCTGAGTTCGATTCTCTCCCTGAAAGAATATATGGTCCACTTTGCCGAGTCTGTATTGACAATGAAAGCATGGAAGGATGCACGGTGGTGAAGGTAGATAGCGTTAACAAGCAGGGTCTCCTTCTAGAAGTGGTGCAAGTTTTGACAGACATGAACCTTCAAATTTGCAAAAGCTATATTTCATCTGATGCCGGTTGGTTCATGGATGTGTTTCATGTCAGAGATGAAAATGGCAATAAACTAACCGACCAGAAGGTCATTAATGACATCCAACAGGCCATAGGAAGATCAAGAGCCTCTCCACCATCACAGCAATacagcaataacaacaacaataacaacaattcgGTGTTCACAATAATGACCAACTACAAGACCTATTCCAAAAAACTCTTCCCACTGGTTCCCCACCCAAACGAGCAGCACACGGCCATCGAAATGACCGGAGCCGACCGTCCCGGTCTGTTCTCCGAGATCTCGGCCGCCTTGGCCGACCTCCATTGCAACATCGTCGAAGCTCACGCATGGAGCCACAACGCGAGGCTCGCATGCGTGGCTTATATTTCCGACCAATCCACGGACTCAGCCATTGACGACCCTTCCCGCTTGGCCTCCATAGAGGACCACTTAACCACCGTGCTGCGCGCCACCACCAACCCCGAGGGCGGTGGCACCAACCGCCCCGGTGTTAAGACCTCGGAGCTGCTCGGAGGAGAAGGCACCGTGACCACCGTGGAGCGCAGGTTGCACCAGCTTATGCTCTCGGTTAGGGACTTTGAGGCCCCCTCTCCCAGAGAGATGAAGGGAAGGAAAAGGATGGTTACAATTGAAAGTTGTGACCAAAAGGGCTACTCAATTGTGAGCATTAAGTGTAAGGACCGTCCCAGGCTCATGTTTGATACCGTTTGCACCTTGACGGACATGCAGTACGTGATTTTCCATGCTTCCATCAGTTCCCATGCAGGTTATGCATTTCAGGAGTATTTTATCAGGCACGTAGACGGATATGCTTTAAATACTGCAAGCGAGAAGGAACGAGTAGTGAAATGCTTAGAGGCAGCTATAGAACGCCGGGTTTGTGAGGGAGTTAGGCTAGAGTTGTGTGCAGACAATAGAGTTGGGTTGCTCTCTGACATAACCCGAGTACTCCGAGAGAATGGCCTCGTCGTTGTTCGAGCAGATGTTGAAACGCATGGAGAGAAATCTGTGAATGCTTTCTATGTGAGGGACATATCAGGGAACGAGATTGACATTGAATACTTCAGTAAGTCAGTGAAGAGGGAAATGGGTCCAATCGTCACCCTCCATGTGAAGAATGATACTAGCAGAAGAAAGACAACCTCACCTAAACGGTCCCCTCTCTCATTCGGAGACATGTTAAGATATCGGATTGAACGTCTTTCTCATGGCTTCATTCTATAA 1452 0.4793 MNTVCWPYFDPEFDSLPERIYGPLCRVCIDNESMEGCTVVKVDSVNKQGLLLEVVQVLTDMNLQICKSYISSDAGWFMDVFHVRDENGNKLTDQKVINDIQQAIGRSRASPPSQQYSNNNNNNNNSVFTIMTNYKTYSKKLFPLVPHPNEQHTAIEMTGADRPGLFSEISAALADLHCNIVEAHAWSHNARLACVAYISDQSTDSAIDDPSRLASIEDHLTTVLRATTNPEGGGTNRPGVKTSELLGGEGTVTTVERRLHQLMLSVRDFEAPSPREMKGRKRMVTIESCDQKGYSIVSIKCKDRPRLMFDTVCTLTDMQYVIFHASISSHAGYAFQEYFIRHVDGYALNTASEKERVVKCLEAAIERRVCEGVRLELCADNRVGLLSDITRVLRENGLVVVRADVETHGEKSVNAFYVRDISGNEIDIEYFSKSVKREMGPIVTLHVKNDTSRRKTTSPKRSPLSFGDMLRYRIERLSHGFIL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0557 483 CDD ACT_ACR_3 294 368 - -
Ssu5g0557 483 ProSiteProfiles ACT domain profile. 39 114 IPR002912 -
Ssu5g0557 483 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 482 IPR040217 -
Ssu5g0557 483 CDD ACT_ACR_1 37 108 - -
Ssu5g0557 483 SUPERFAMILY ACT-like 34 103 IPR045865 -
Ssu5g0557 483 SUPERFAMILY ACT-like 149 224 IPR045865 -
Ssu5g0557 483 MobiDBLite consensus disorder prediction 226 247 - -
Ssu5g0557 483 Gene3D - 149 229 - -
Ssu5g0557 483 ProSiteProfiles ACT domain profile. 374 452 IPR002912 -
Ssu5g0557 483 CDD ACT_ACR_2 153 226 - -
Ssu5g0557 483 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 2 482 - -
Ssu5g0557 483 SUPERFAMILY ACT-like 371 434 IPR045865 -
Ssu5g0557 483 Pfam ACT domain 154 215 IPR002912 -
Ssu5g0557 483 Pfam ACT domain 374 425 IPR002912 -
Ssu5g0557 483 ProSiteProfiles ACT domain profile. 154 234 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0557 Ssu-Chr5 12239504 12243360 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0557 - - gmx:100820595 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0557 5 12239504 12243360 Ssu5g0557 5 12239504 12243360 ECH