Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0553 ATGGAGACGTTACCGACGATGAAGCGAGGAGGAGGAGGGAGATCGAAGCCCGTTCAGACCTCAAAATCGTCCCTCGTCATGGCCTTCTTCTCCTGCGTCGCGTGGCTTTACGTCGCTGGCAGGTTATGGCAAGACGCAGAGAACCGAAATTTACTCGCTAGTCTTCTCAAGAAGAATTCAgctcagAGGCCTAAGGTTCTTACAGTGGAAGATAAGCTAATGGTCCTAGGGTGCAGGGATCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGACATTGGCTAAGAGCCAAGGGTACCTCAAGGGGCAGGGCCTGAAAAGTGGCTCTTCTGATCGTAGGCTTCTTGCTGTTATTGGAGTGTATACAGGATTTGGAAGTCGATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTATTGGGCGGAGTGCTAATCGAGGTGATAGCTTAGATCGCAATATTGATGAGGAAAATCGCTCAACAAAGGATTTCCTGATTCTTGAAGGTCATGAGGAAGCTCAAGAGGAGTTgcctaaaaaagtaaaaaccttCTTTAGTACTGCAGTTCAGAACTGGGATGCTGACTTTTATGTGAAAGTTGATGACGGCATTGATATTAATCTGGAGGGTTTAATTGAACTTCTTGACCGTCGCCGTGGTCAGGATGGGGCATATATTGGATGCATGAAATCAGGAGAAGTGATATCAGAAGAGGGAAAGCCGTGGTATGAACCTGAATGGTGGAAATTTGGGGATGAAAAAACGTATTTCCGACATGCGGCTGGTTCacttgttataatttcaaagaatttggcACAATACATTAATATAAACAGGTTAGTTCTCAATGTCATATCTGCACAAGGAGGAACCTTAGAAGCTGAAATAGGCAGCTTTGGTTCTGGTATGGTGCCTTAA 975 0.4328 METLPTMKRGGGGRSKPVQTSKSSLVMAFFSCVAWLYVAGRLWQDAENRNLLASLLKKNSAQRPKVLTVEDKLMVLGCRDLERRIVEAEMELTLAKSQGYLKGQGLKSGSSDRRLLAVIGVYTGFGSRLKRNVFRGSWMPRGDALKKLEERGVVIRFVIGRSANRGDSLDRNIDEENRSTKDFLILEGHEEAQEELPKKVKTFFSTAVQNWDADFYVKVDDGIDINLEGLIELLDRRRGQDGAYIGCMKSGEVISEEGKPWYEPEWWKFGDEKTYFRHAAGSLVIISKNLAQYININRLVLNVISAQGGTLEAEIGSFGSGMVP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0553 324 Pfam Galactosyltransferase 130 303 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu5g0553 324 Coils Coil 78 98 - -
Ssu5g0553 324 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE HPGT3 3 305 - -
Ssu5g0553 324 Gene3D - 144 300 - -
Ssu5g0553 324 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 3 305 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu5g0553 324 Pfam Domain of unknown function (DUF4094) 21 98 IPR025298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0553 Ssu-Chr5 12161185 12165746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0553 74 297 Glycosyltransferase AT2G25300 80.444 2.00e-132 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0553 K20854 - gmx:100816327 571.622