Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0552 ATGTCTTTTAACCTCAACAAAGAGCTTGCCCTCTTGGTCTTACAGTACTTTGATGAGGAAGATTTCAAGGAAGCAGCACGCACGTTTGGGCGTGAGAGTGGGTTATACTTTGACTTGAAGTATTTTGAGGACATGGTGCTTGAGGGCAACTGGGATGAGGCTGAGAACTATCTTTCAGGGTTCACAAAGCATCATCAAAATCCTGATCAAGAACCACACCTTTTAATGGACCGAGACAGTAATTCCCAACCATCTACATCTGTTCTAACATATTCAGGAGCAGCTATGGAGTGGAAACCTTCAACCAATGGAAGGCCAAGCATGGATTCTGATGAGAGAGACTGCAATGGAGTTTTTGGGGATGTGAAACCGTATTCAACTGAAGAATCCCATAACAAATCAaagaatttatttgacatttgcaCACCATCTCTGTGCCAGTCCTTGCAGCTCCCTAAGCATCCCGAAGTAAAAAAGATTGTTAGACTGGCTTACAATAACGCGGGAAATTCCATTTTGGCATTGGCATCGAATGGTATTCATCTAGTTTGGCTCTGGCCACGTACTAGCTTTAACTTGGATGGCAAGGCTAGTGCACAGGTTTGCTCTCAACTGTGGCAACCAAAGGATGGCTTGCAATTTATGATCAATGACCTTACAACTGTCAAATGTGGAAACCCAATTTCCTGTTTTGCTTTATCGAAAAAGGATGGATATGTCATTTCAACATCAGGGGGGATGGTCTCCTTGTTCAATATGGTGACATTTAAGACTCTGAGAACTATCATGTCTCCACCACCTATGGTAACATGTCTTGCCTTCTACCCTGAAGATAACAATATATTTGGTATTGGCTTTGATGACTCCAGTATAGTTATATACCATGTCCGTGATCATGAGATTATTCTATGGAATACAAATGGGTGGGAAAAGCTGAAAGAAAGGCACTTGCAAATAGAAGGAAACCCGGTGCCAGTATCTGAAACTCAAATTCAGTTTCACCCTGATCAGATAAACTTCCTTGTTGTGCATATTAATCATCTTGCAATTTATGAAGCAACAGAACTAGGATGTGTCAACCAGTGGGTTCCAGAAGTTCCAGTGCTTATCTCTCAAGCAACTTTCTCATCTGATGGTCACACTGTGTATTCCATTTTTGTTGATGGGACTGTGGCAATATTTGATgcttcaaattttcaacttcGTTGTCGAGTCTATCCCTCTTCCTACCTTTCTTCAACTTCAAGTTTGAGCATCTACCCAATTTCTATAGCTGCACATCCACATAAACCAACCCAGTTTGCTGTGGGGCTCACAGATGGTAGTGTTTATGTATTTGAGCCTCGGGAGCCAGAGGGTGATTGGATCAAAAGCCATTGA 1380 0.4109 MSFNLNKELALLVLQYFDEEDFKEAARTFGRESGLYFDLKYFEDMVLEGNWDEAENYLSGFTKHHQNPDQEPHLLMDRDSNSQPSTSVLTYSGAAMEWKPSTNGRPSMDSDERDCNGVFGDVKPYSTEESHNKSKNLFDICTPSLCQSLQLPKHPEVKKIVRLAYNNAGNSILALASNGIHLVWLWPRTSFNLDGKASAQVCSQLWQPKDGLQFMINDLTTVKCGNPISCFALSKKDGYVISTSGGMVSLFNMVTFKTLRTIMSPPPMVTCLAFYPEDNNIFGIGFDDSSIVIYHVRDHEIILWNTNGWEKLKERHLQIEGNPVPVSETQIQFHPDQINFLVVHINHLAIYEATELGCVNQWVPEVPVLISQATFSSDGHTVYSIFVDGTVAIFDASNFQLRCRVYPSSYLSSTSSLSIYPISIAAHPHKPTQFAVGLTDGSVYVFEPREPEGDWIKSH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0552 459 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 3 67 IPR027728 GO:0006355
Ssu5g0552 459 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 111 300 IPR027728 GO:0006355
Ssu5g0552 459 Gene3D - 148 457 IPR015943 GO:0005515
Ssu5g0552 459 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 300 458 IPR027728 GO:0006355
Ssu5g0552 459 SUPERFAMILY WD40 repeat-like 221 451 IPR036322 GO:0005515
Ssu5g0552 459 SMART Lish 5 37 IPR006594 GO:0005515
Ssu5g0552 459 PANTHER TOPLESS-LIKE PROTEIN 3 67 - -
Ssu5g0552 459 PANTHER TOPLESS-LIKE PROTEIN 300 458 - -
Ssu5g0552 459 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Ssu5g0552 459 PANTHER TOPLESS-LIKE PROTEIN 111 300 - -
Ssu5g0552 459 SMART WD40_4 255 295 IPR001680 GO:0005515
Ssu5g0552 459 SMART WD40_4 413 447 IPR001680 GO:0005515
Ssu5g0552 459 SMART WD40_4 355 395 IPR001680 GO:0005515
Ssu5g0552 459 SMART WD40_4 215 252 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0552 Ssu-Chr5 12138571 12144183 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0552 - - vun:114195532 546.199