Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0541 ATGGTTGAAGAGCAGCCTCAGCTTAAACCCAGGAACTATATGTCTACAGTTAGTAATGCTTCTGGTGCTGCTAGAGCTATATCAGAAACCAAAAATGTGGCCAAGGGTTTATCATTTTCTCCATTTCTCCAATTTGATAATCAACCCAAGGGAAAGACAAAGGCTAGTGACAATTTGGGCAATGGTGGCAGGCCTATCATGCCCAAGAAACTGCATTCTGATTTTAGTAACATGCAGTTTGGTTTTACTAATGTTCCCTGGAATAGTAATGGTCACACAGGAAGGCAATCAAATAATTATGGCCTACGGACCAATATATATTTGGACTGTGATAAAGGGGTGAGCTTTGCTGAAGACTCTGGTGCCAAAATAAATTCTGGATTTGGAATCGGCCAGTTAATGGAATATCCAAGCTCCATCTCGAGAGATGTTGGTGGTAGTGATAGCTGTATTTCGGTTGTTAATGGAAAGATATATGAATCAAATTATGAATCAAGCTTGCCATCAGATACATCTTTGGGTGCAAATATTTTGCGTGGTTCAAACAATGTATCTTCTCTTGGACAAGAAAATCATTTTACTCCAGAGACATCCATTCCatttgaagaaaatttgaaaGGCATTCCCTATCTTGTTTCTAGCTGTGTGTCAAATCAGACTCCTACTTTGCCCGTGCGGCAGGGCATTAATATGGATGCTTATTTGCTTGATGAAAATATGAGGTTGCTTGCATTGACACAGATACTGGAGTTATCTAAGCAACAGCATGCTTTGTATTTTCGTGATATGAATCAAAAGCATGGGAGATCCAGCAATATTTCAAAGCTTCAGCATTATATGTATGAGGCTTCAACATCTGAACAGGGCACTTCTGGTGCATCATTGGACTTGCCCCAAAATAGAGGGATTTGTGGGAATCCTGAGAGTACTGTTGGTTTAGAGAAACTGGCTTCCCTCACAGGTATGAACAGATATTGTTGTTTGTCTGGGCTGGCACCAGTACCTTTACATTCCAAAGAAAAGGAATCACAACGTAAACATTCCTATGATCTTCAAAATGAAGAGCCTTCTTTAAGCCTTGGAATTAACAAAGACAATACCAGATCAAGTGCATGTGAAAAATGCTCAGAGCAACTATCAAATATATGTTTGGGAGGCAAGTACCCTTGTGCTGCTCAGATAAACTGTTGCAGAAGCAATTTTTTCTCGGGAATTCAACCCCTTTGTTATAACTTAAAGCAACGACTTGCAAATGCCAGTGGTGAAACTTCTTTGAAGATGACATCAGATTTGAGTAGAGATCTGAATACTTCAAAGGATGAAAATATCCACTTTGAGCAAGGTGGGAAGTTAGATGGCCAAGACTTGATGAAAATTGGCTTTCATACACCTCAATGGAGAGATGTGCCGAGTAAAGTCCGGAAAGCAGTTTGTGATGCAACATCTTTAGATCAGACAGATACTGGTTTGGATTGGGAAGGACAAGACGGTGTTCAACTTGGAAACATTTCTATGAAACGTTTCAAAAGAACTATTGATATGGGAGACATGTCGAAAGAGCAAGACAATTCTAATGTATCTTCTGGTTGCTCTGCTCCTGTGGTTACTCAGGCATCTGTGGACGTCAACAAAATTGATTCCTGTACCGATGATGCTGTAGCCACTGGCTTTGTCAACAACCTTGTAGTTGATGAAGGGTCAGGAATTCATCAAGCCTGGTTGTCAGATTTTGCTGAAAGTGAAAGAAGTGATGAGTTTCTAGGCTCGACTTGTGGGAGTTACTTGAACAATGGTTATCTGAGAGTGTTAAATGATCAACCATGTCACAATCTCCTTGATGATCTTAAACGGTTAGATTCCTTGATATGGAAGAAAGGACGGAATCAAAATCATTTTGTGCTGTCTGCTAATTGTAAAACCAATCACTCTCAAAAAGTCAAGAAGGGCCTCAAAGGAAAAAAGCGAAAGAGAAATGAGATGAGGATTCTAGACTCTTCATTATCTTCTGGATTCCCTTCCTTATTGCATAAAAAGAATGGTGAAGGTGCTGGCATTCTTAATTCTTCTTCTAGTTTGTCAAAAGAAATGCAAATGCATTCTTTGTCTAGCCTGAAAAGATCATCTAACAAGTCTTCCTTTGTTCAATCTAGTAACAAACAAAGACACTCTGCATTTTCATCCAAATTTCTTTGTTGTAAGAATCATCCGAGCAAGCATCAAAGTTACAAAATTGGCTTTGAGTCACAATCAAATTCTGATGCTGAGTTTAACACATTGCCTGGAGTTTCTggaacaaagaaattaaaaaaggatcTCACTTCTGATTGTTTtgagcattttcaaattcaagaaCCAGCCTATGAAGAACCTGAAAATGCTAAGTTGAGGCCATTCTCTTGCAGGAAGGAAAATGCTCATAGAATCACAAAGCCAATAGTGTGTGGAAAATATGGTGAAATATCTAATGGGCAATTGGCTAGAGGGGTGCAAAAACCAGCAAAAATTGTCTCTCTCAGCAAGATTCTTAAAACTTCTAAAAGATGTATGGTCCATACAAATGGAAAACCTAGACTAActtcaaaaaagaaatggaagagaTTGAACATTGGAACAAGTAGTGGGCACTGCTGTGGGAACCCtggtttaaaaattaaggaagaTAATGAAACCCAAAATACAGTAATTTGTAATGAAACAAATGTTGATGTGTCCATGGAAGATTTGGAGCGAGGTGGCAAGCCACCTGTTTACAAAGGGAAGAAAGATGCCAAAGCTAAGCGGGGTGATAGTGTTGGAAATAGAGCTGATGCTCCATTGAAGGTGAAGGCCAAGGAAATTCGGAAACAGCGTAGCATTAATGAACTCACTGCTAAAGAAACCAAAGTGACGGATATGATGAATTGTGCTCAAGATAGGGAGCGTGGTTTGTGTAGCACAAAAAGTAGAAACTCTATTCAAGGTCACACGAGCATATCCATCATAAATTCAGATGCTTTCTGCTGTGTGTGTCGAAGTTCAAGCAATGATAAAATCAACTGTTTGTTGGAGTGTAGTCAATGTctaattagaGTGCATCAGGCTTGCTATGGTGTTTCCACATTACCCAAAAAAAGCCCTTGGTGTTGCAGGCCATGCCGAacaaactcaaaaaatattgtatatccAATAAGCATTTCcaatattcaatttgatttctcAGTCCTGATATAG 3210 0.3779 MVEEQPQLKPRNYMSTVSNASGAARAISETKNVAKGLSFSPFLQFDNQPKGKTKASDNLGNGGRPIMPKKLHSDFSNMQFGFTNVPWNSNGHTGRQSNNYGLRTNIYLDCDKGVSFAEDSGAKINSGFGIGQLMEYPSSISRDVGGSDSCISVVNGKIYESNYESSLPSDTSLGANILRGSNNVSSLGQENHFTPETSIPFEENLKGIPYLVSSCVSNQTPTLPVRQGINMDAYLLDENMRLLALTQILELSKQQHALYFRDMNQKHGRSSNISKLQHYMYEASTSEQGTSGASLDLPQNRGICGNPESTVGLEKLASLTGMNRYCCLSGLAPVPLHSKEKESQRKHSYDLQNEEPSLSLGINKDNTRSSACEKCSEQLSNICLGGKYPCAAQINCCRSNFFSGIQPLCYNLKQRLANASGETSLKMTSDLSRDLNTSKDENIHFEQGGKLDGQDLMKIGFHTPQWRDVPSKVRKAVCDATSLDQTDTGLDWEGQDGVQLGNISMKRFKRTIDMGDMSKEQDNSNVSSGCSAPVVTQASVDVNKIDSCTDDAVATGFVNNLVVDEGSGIHQAWLSDFAESERSDEFLGSTCGSYLNNGYLRVLNDQPCHNLLDDLKRLDSLIWKKGRNQNHFVLSANCKTNHSQKVKKGLKGKKRKRNEMRILDSSLSSGFPSLLHKKNGEGAGILNSSSSLSKEMQMHSLSSLKRSSNKSSFVQSSNKQRHSAFSSKFLCCKNHPSKHQSYKIGFESQSNSDAEFNTLPGVSGTKKLKKDLTSDCFEHFQIQEPAYEEPENAKLRPFSCRKENAHRITKPIVCGKYGEISNGQLARGVQKPAKIVSLSKILKTSKRCMVHTNGKPRLTSKKKWKRLNIGTSSGHCCGNPGLKIKEDNETQNTVICNETNVDVSMEDLERGGKPPVYKGKKDAKAKRGDSVGNRADAPLKVKAKEIRKQRSINELTAKETKVTDMMNCAQDRERGLCSTKSRNSIQGHTSISIINSDAFCCVCRSSSNDKINCLLECSQCLIRVHQACYGVSTLPKKSPWCCRPCRTNSKNIVYPISISNIQFDFSVLI 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0541 1069 MobiDBLite consensus disorder prediction 338 363 - -
Ssu5g0541 1069 SUPERFAMILY FYVE/PHD zinc finger 994 1051 IPR011011 -
Ssu5g0541 1069 ProSitePatterns Zinc finger PHD-type signature. 1000 1045 IPR019786 -
Ssu5g0541 1069 MobiDBLite consensus disorder prediction 338 352 - -
Ssu5g0541 1069 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 5 1053 - -
Ssu5g0541 1069 SMART PHD_3 999 1046 IPR001965 -
Ssu5g0541 1069 MobiDBLite consensus disorder prediction 696 718 - -
Ssu5g0541 1069 Pfam PHD-finger 1012 1046 - -
Ssu5g0541 1069 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 5 1053 - -
Ssu5g0541 1069 ProSiteProfiles Zinc finger PHD-type profile. 997 1048 IPR019787 -
Ssu5g0541 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 986 1052 IPR013083 -
Ssu5g0541 1069 MobiDBLite consensus disorder prediction 907 933 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0541 - - gmx:100816713 1607.04