Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0539 ATGGGGTGTGGCAATTTGTTCTTCACAGTTCTGGTAACCTTCTCAGTGGCTCTCATAACATACAACATCATCATCTCATCCAATGCCCCTCTCAAGCAAGACTTCCCGGGCCCTTCTCGCCGCCCTTCCATTTCCGTGGATCCCCTCATCAAGATGCCACTCCACAGATCATCCTCTTCCGATGCAAAGAAGAGGCTGTTTCACACCGCAGTCACCGCCTCTGACTCTGTCTACAACACGTGGCAGTGCAGAGTAATGTACTTTTGGTTCAACAAGTTCAAGGACGGCCCTGAATCTGGCATGGGGGGCTTCACTCGGATCCTGCACTCTGGCAAGCCTGACCGGTTCATGGACGAGATCCCCACCTTTGTTGCTCAGCCTCTGCCTTCTGGGATGGATCAGGGTTACATAGTCCTTAATAGACCATGGGCATTTGTACAGTGGCTTCAACAAGCAGATATTAAAGAAGATTACATATTGATGGCAGAGCCAGATCATATAATCGTCAAACCTATACCCAACTTAGCCAGAGATGGGCTAGGAGCTGCATTCCCTTTCTTTTACATTGAGCCTAAGAAGTATGAAACAGTGCTAAGGAAGTACTTCCCTGAGGAGAATGGACCAATAACCAATATTGATCCAATTGGGAATTCACCTGTTATTGTTGGGAAGGAATCCCTTAAGAAGATTGCTCCCACTTGGATGAATGTTTCCCTGGCAATGAAGAAGGACCCTGAAACCGACAAAGCTTTTGGATGGGTGcttgaaatGTATGCTTATACTGTTGCATCTGCTCTTCATGGTGTTCGTAACATATTATACAAGGACTTCATGATTCAGCCTCCATGGGACAAAGAAATTGGCAAGACATACATAATGCACTACACTTATGGTTGTGACTATACAATGAAGGGTGAGCTGACCTATGGAAAGATTGGAGAATGGAGGTTTGATAAAAGATCTTATGATAAAGTTGCTCCCCCAAAAAATCTGACATTGCCGCCACCCGGAGTTCCAGAAAGTGTGGTGACGCTCGTAAGAATGGTAAATGAAGCTACAGCAAGTATTCCAAATTGGTGGTCATAG 1086 0.4549 MGCGNLFFTVLVTFSVALITYNIIISSNAPLKQDFPGPSRRPSISVDPLIKMPLHRSSSSDAKKRLFHTAVTASDSVYNTWQCRVMYFWFNKFKDGPESGMGGFTRILHSGKPDRFMDEIPTFVAQPLPSGMDQGYIVLNRPWAFVQWLQQADIKEDYILMAEPDHIIVKPIPNLARDGLGAAFPFFYIEPKKYETVLRKYFPEENGPITNIDPIGNSPVIVGKESLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYTVASALHGVRNILYKDFMIQPPWDKEIGKTYIMHYTYGCDYTMKGELTYGKIGEWRFDKRSYDKVAPPKNLTLPPPGVPESVVTLVRMVNEATASIPNWWS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0539 361 PANTHER HYDROXYPROLINE O-ARABINOSYLTRANSFERASE 1 1 360 - -
Ssu5g0539 361 PANTHER PEPTIDYL SERINE ALPHA-GALACTOSYLTRANSFERASE 1 360 IPR044845 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0539 Ssu-Chr5 11907514 11912041 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0539 K20782 - gmx:100813136 711.064