Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0536 ATGGAGCCGGAAGTGAGCATAGAGGGATCGGCGATGATCCAGGTGGCGGTGGTTCCGATCGGAACGGTGCCGTCGAACCTGCTGCGGGACTACTACTCGATGCTGCTACCGCTGCACACGATCCCGCTCTCCGCGATCAGCTCCTTCTACACGGAGCACCAGAAGTCGCCGTTCGCGGTGCAGCCGTGGGACTCCGGCTCGCTCCGGTTCAAGTTCGTCCTCGGCGGCGCGCCGCCGAGTCCCTGGGAGGACTTCCAGTCGCACCGCAAAACCCTCGCCGTCGTCGGCGTCGTCCACTGCCCTTCCTCGCCCGATCTCGACGCCGTCGTTGACCTCTTCGCCAATGCCTGCAGGTCCTTCCCTTCCTCGCTCGTCGATCGGTGTTTCGCGTTCTGCCCTAACGATTCTCAGCTTGAGGATGGAAGTAAGAAAGGGGGGAATTTGAGGTTGTTTCCTCCTGCAGATCGTCCAACTTTGGAGTTCCACTTGAACACTATGATGCAAGAGATTGCTGCCTCGCTGCTTATGGAGTTTGAGAAATGGGTGCTTCAGGCAGAATCTTCTGGAACCATTCTCAAGACACCTTTAGATTCTCAAGCTAGTCTCAGCTCAGAGGAGGTTATCAAGGCCAAAAAGAGGAGGCTTGGGCGTGCCCAGAAGACCACTGGTGATTACTGCTTGCTGGCAGGGTCCCCAGTTGATGCCAATGCTCATTATTCTACTGCATTGGAACTTGCCAGGTTAACCGGTGATTACTTCTGGTATGCTGGAGCACTGGAGGGTAGTGTTTGTGCCTTGCTgATTGACCGTATGGGCCAGAAAGATTCAGTCCTGGAAGACGAAGTTAGATATCGTTATAATAGTGTCATCTTGAATTACAAGAAGTCACAAGATAATGCTCAGCGAGTTTCTCCCATAACTTTTGAACTTGAAGCTACTTTGAAATTAGCTAGGTTTCTTTGCAGCAGGAGAGAGCTGACCAAGGAGGTGGTGGAGTTGTTGACCACTGCTGCAGATGGTGCTAAATCTTTAATTGATGCAAGCGATAGGctcatattatatattgaaatagcTCGTCTGTATGGAAGTCTTGGATACCAGAGAAAAGCTGCATTCTTCTCAAGGCAGGTTGCACAGTTATATCTGCAGCAAGAAAATAGACTGGCTGCAATTAGTGCTATGCAAGTTTTGGCAATGACCACCAAAGCTTATCATGTTCAAAGTAGATCATCAATCTCCGATCATTTTTTGCACAGTAAGGGAATTGTATCAAATAATGCTGATAGTGGGAAAACATATCACCAATCAGCAGTCTCACTATTTGAGTCTCAATGGAGTACCCTCCAGATGGTTGTATTAAGAGAAATTCTGCTCTCTGCCGTCCGTGCTGGTGATCCTCTTACTGCATGGAGTGCAGCAGCACGACTTCTTAGATCCTACTATCCTCTAATAACACCTGCTGGGCAAAATGGCCTTGCTAATGCACTTTCAAATTCAGCTGAGAGGCTGCCACCAGGGACTCGTTGTGCTGATCCTGCTTTACCCTTTGTGAGGCTGCATTCCTTTCCTCTCCACCCAACACAAATGGACATAATAAAACGTAGTCCATCTAGAGGAGACTGGTGGGCCGGTGCTGCTCCTTCAGGCCCTTTCATTTATACACCATTCAGTAAAGGAGAGCCTAATAATATCAAGAAGCAAGAGCTTATTTGGATTGTTGGAGAGCCTGTTGAGGTCTTGGTGGAATTGGCAAACCCATGTGGCTTTGATTTAAGGGTTGATAGCATCTATCTATCTGTGCATTCTGGAAATTTTGATGCCTTCCCTGTGAGTGTAAGCCTTCTACCCAATTCTTCAAAAGTGATCACCTTATCTGGCATTCCAACATCAGTGGGGCCAGTTACAATTCCTGGGTGCATTGTTCATTGTTTTGGTGTTATTACTGAACATCTGTTTAAAGAGGTTGACAATCTGCTTCTTGGGGCCTCACAAGGGCTGGTCCTTTCTGACCCTTTTCGATGCTGTGGATCTCCCAAGTTGAAGAATGTGTCTGTTCCTAATATTTCTGTAGTACCACCACTTCCATTGTTGGTATCACATGTTGTTGGAGGTGATGGTGCCATCATTCTGTATGAAGGAGAAATTCGTGATGTGTGGATACGCCTGGCTAATGCAGGTACTGTTCCAATTGAGCAGGCCCATATTTCACTGTCAGGGAAAAATCAAGATTCTGTAATTTCATATTCTTCTGAGACTTTACAATCTTGCCTCCCTTTAAGGCCTGGAGCAGAAGTTACATTCCCTGTGACCTTGAGAGCCTGGCAGGTTGGCTTGGTGGATGCTGATGCTGGTGCAGGGAAGACTCACTCTGGGAACAATATGAGGCATTCCAAAGATGGAAGCAGCCCATCACTGTTGATACACTATGCTGGTCCAATGAAAACCTCTGAAGATACTTCAACAAATGGATCAACTGTGCCCCCTGGTCGACGTCTTGTTGTTCCCCTGCAGATTTGTGTTTTGCAGGGTTTGTCTTTTGTGAAGGCTCAGCTTCTTTCAATGGAGTTTCCTGCTCATATTGGTGAAAATCTTCCAAAGTTGGATGACTTAAATAGTAAGTCTACTGGAGGACATGCTGACTCACAGACAAAAATGGACAGATTGGTGAAAATAGATCCTTTCAGAGGAAGTTGGGGACTGCGATTTCTTGAACTTGAGTTATCTAATCCAACTGATGTTGTGTTTGAAATCAATGTCTCTGTCAAACTGGAGAACTCAAGCAACGAGGACAATCATTTTACTGATCAGGATGCTACAGAATATGGCTATCCTAAAACAAGAATTGATAGAGATTGCTCAGCAAGGGTTCTAGTGCCCCTTGAGCATTTTAAATTACCTGTTCTTGACGATTCCTTTTTTATGAAGGACACCCAGGCAGATGGGAATGGCGGAGGAAGAAATGCATCCTTCTCTGAAAAGAACACCAAAGCTGAACTCAATGCTTGTATCAAGAACCTTATATCTAGGATTAAGGTTCAATGGCATTCAGGACGCAATAGCTCTGGGGAGTTAAATATCAAGGAAGCTATCCAGGCAGCTCTCCAAACATCAGTCATGGATGTTTTACTGCCGGATCCATTGACGTTTGGCTTCAGGCTTGTTAGAGATGGTTCTGAATCAGGAAAACCTTATCCTGATAAAGAATCTGATTTAGTTGAATCTCCTGCTACCAAAGGTTCTGTGCTTGCACATGAAATGACCCCAATGGAAGTTTTGGTTCGGAATAACACTAGGGATATGATCAAAATGAGTCTTAATATTACGTGCAGAGATGTAGCCGGGGAAAATTGTGTAGATGGTACCAAAGCAACTGTTCTATGGActgGTGTTCTGAGTGATATTACTATGGAAATTCCCCCACTTCAACAAATTAAACACTCTTTCTGTCTACATTTTCTTGTCCCTGGAGAGTATACACTACTTGCTGCAGCAGTGATTGATGATGCAAATGACATTCTTCGCGCTCATGCCAAGACCACTTCAGCTGCTGAACCGATTTTCTGTCGTGGACCACCATATCACGTTCGTGTCCTTGGGACTGCATGA 3606 0.4581 MEPEVSIEGSAMIQVAVVPIGTVPSNLLRDYYSMLLPLHTIPLSAISSFYTEHQKSPFAVQPWDSGSLRFKFVLGGAPPSPWEDFQSHRKTLAVVGVVHCPSSPDLDAVVDLFANACRSFPSSLVDRCFAFCPNDSQLEDGSKKGGNLRLFPPADRPTLEFHLNTMMQEIAASLLMEFEKWVLQAESSGTILKTPLDSQASLSSEEVIKAKKRRLGRAQKTTGDYCLLAGSPVDANAHYSTALELARLTGDYFWYAGALEGSVCALLIDRMGQKDSVLEDEVRYRYNSVILNYKKSQDNAQRVSPITFELEATLKLARFLCSRRELTKEVVELLTTAADGAKSLIDASDRLILYIEIARLYGSLGYQRKAAFFSRQVAQLYLQQENRLAAISAMQVLAMTTKAYHVQSRSSISDHFLHSKGIVSNNADSGKTYHQSAVSLFESQWSTLQMVVLREILLSAVRAGDPLTAWSAAARLLRSYYPLITPAGQNGLANALSNSAERLPPGTRCADPALPFVRLHSFPLHPTQMDIIKRSPSRGDWWAGAAPSGPFIYTPFSKGEPNNIKKQELIWIVGEPVEVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSVSLLPNSSKVITLSGIPTSVGPVTIPGCIVHCFGVITEHLFKEVDNLLLGASQGLVLSDPFRCCGSPKLKNVSVPNISVVPPLPLLVSHVVGGDGAIILYEGEIRDVWIRLANAGTVPIEQAHISLSGKNQDSVISYSSETLQSCLPLRPGAEVTFPVTLRAWQVGLVDADAGAGKTHSGNNMRHSKDGSSPSLLIHYAGPMKTSEDTSTNGSTVPPGRRLVVPLQICVLQGLSFVKAQLLSMEFPAHIGENLPKLDDLNSKSTGGHADSQTKMDRLVKIDPFRGSWGLRFLELELSNPTDVVFEINVSVKLENSSNEDNHFTDQDATEYGYPKTRIDRDCSARVLVPLEHFKLPVLDDSFFMKDTQADGNGGGRNASFSEKNTKAELNACIKNLISRIKVQWHSGRNSSGELNIKEAIQAALQTSVMDVLLPDPLTFGFRLVRDGSESGKPYPDKESDLVESPATKGSVLAHEMTPMEVLVRNNTRDMIKMSLNITCRDVAGENCVDGTKATVLWTGVLSDITMEIPPLQQIKHSFCLHFLVPGEYTLLAAAVIDDANDILRAHAKTTSAAEPIFCRGPPYHVRVLGTA 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0536 1201 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 1 1199 IPR013935 -
Ssu5g0536 1201 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 328 743 IPR013935 -
Ssu5g0536 1201 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 9 191 IPR013935 -
Ssu5g0536 1201 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 201 272 IPR013935 -
Ssu5g0536 1201 PANTHER TRAPP II COMPLEX, TRS120-RELATED 1 1199 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0536 K20306 - gmx:100784850 2272.66