Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0524 ATGCATTCACAACCTCTTATGATAATGTCCCTCCACATGCTCATCATCACACCCCTTTTGGTTCTATTCATGAGTATCCATTCTCATGCACTCGTTGAGCCTTCTAATTGGCCATACACACCAAACACAGGAAGTGTTAGAGCTGCGTATTGGCCTGCCGGTGATGACCTTTCACCCTCTTCTATTGACACAAAATACTTCACTCACATCTACTACGCCTTCATCGAACAAGACCCACAATTTTTTAACCTCAATGTCACcgaatttcacaaaaaatggaTGCCACAATTCATCAACGGGCTCCGCTACCGTTACCCGCCTGTGAAAACTCTTTTGTCAATTGGGGGAGGTGGCAGCAACTCAACCGCGTTCTCCCTCATGGCTAGCACCAAACACAGCCGAGAAGTTTTCATAAACTCCACCATCCACGTGGCACGCCAATACGGGTTCAACGGTCTTGATTTAGATTGGGAGTTCCCAGAGGATGAACGTGATATGTCCAACCTTGGTGCCTTGTTTCAAGAGTGGCACCAAGCTTTGGTGGTGGAAGCTCAAATTCATAGAAAACCGCGTTTGCTTTTGACTTCCGCGGTTTACTACGCTTCCACCATAAAGCTTATTGGTAATAGGCCGAGGTCGTACCCGGCCCAAGCCATTCGGGACTACTTGGATTGGGCTAGCCCAATGTGCTTTGATTACCATGGGGCCTGGGCCAATTTTACGGGCTTCAATGCTGCACTGTATGATCCAAAGTCCAACATAAGTACCCATTATGGGCTCGGGTCTTGGATCGGATCGGGTGTACCGGCCCAAAAGTTGGTTATGGGCTTACCGTTATACGGGCGGACATGGGAGCTCCGAGATCCGAATGTTCACGGGGTTGGGGCAGAAGCGGTTGGGCCAGCCACTGATACGGATGGCACTTTGGACTATGATGAAATATTGGAGTTTAACAAAGAGAATGGTGCCACTGTTGTGTATGATGATGTAGCCGTGTCTTTCTACTCCTATGCGGGCACTACTTGGATCGGGTACGACGATGGACCATCCATAACCAAGAAGGTTCAGTTTGCTAAGTCATTGGGCTTGAAGGGCTATTTCTTTTGGGCTGTTGGGAAGGACAAGGATTGGACCATTTCAAGACAAGCTTCAAATGCATGGGGACACTGA 1170 0.4778 MHSQPLMIMSLHMLIITPLLVLFMSIHSHALVEPSNWPYTPNTGSVRAAYWPAGDDLSPSSIDTKYFTHIYYAFIEQDPQFFNLNVTEFHKKWMPQFINGLRYRYPPVKTLLSIGGGGSNSTAFSLMASTKHSREVFINSTIHVARQYGFNGLDLDWEFPEDERDMSNLGALFQEWHQALVVEAQIHRKPRLLLTSAVYYASTIKLIGNRPRSYPAQAIRDYLDWASPMCFDYHGAWANFTGFNAALYDPKSNISTHYGLGSWIGSGVPAQKLVMGLPLYGRTWELRDPNVHGVGAEAVGPATDTDGTLDYDEILEFNKENGATVVYDDVAVSFYSYAGTTWIGYDDGPSITKKVQFAKSLGLKGYFFWAVGKDKDWTISRQASNAWGH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0524 389 Gene3D - 279 345 IPR029070 -
Ssu5g0524 389 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 45 389 IPR001223 GO:0005975
Ssu5g0524 389 Pfam Glycosyl hydrolases family 18 49 374 IPR001223 GO:0005975
Ssu5g0524 389 SUPERFAMILY (Trans)glycosidases 46 386 IPR017853 -
Ssu5g0524 389 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 150 158 IPR001579 GO:0004553|GO:0005975
Ssu5g0524 389 Gene3D Glycosidases 60 375 - -
Ssu5g0524 389 CDD GH18_plant_chitinase_class_V 46 380 - -
Ssu5g0524 389 PANTHER CLASS V CHITINASE CHIT5A 35 388 - -
Ssu5g0524 389 PANTHER CHITINASE 35 388 - -
Ssu5g0524 389 SMART 2g34 45 374 IPR011583 GO:0008061
Ssu5g0524 389 SUPERFAMILY Chitinase insertion domain 280 345 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0524 Ssu-Chr5 11363787 11365447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0524 46 387 Glycoside Hydrolase AT4G19810 44.186 1.21e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0524 K01183 - gmx:100787511 694.501