Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0517 ATGTTCCCAAGAAACCCTTCGTACACAAACCCAGAACCTTGCCAGCACCTTCTTGAGTACAAGCTCAAGCATGGCTTCAATGGCTACAAAGCCATCCAGAAGCTCCTTGTGATCTCTCCAATTGGGAAAACCAGTGTGAAGAAACCCAACACAAAGTTACCCAGATGCAGTTTCTGTAATGGGTGTGAAGGGAGGTTCTATTTATGCCTGATTTGCTCTTCATTCTCATGTTTGGATCACACCCTTTTGCACCCTCAATCAGAGACCGGTCATGCTGTTTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGGTGTGCCGTGATCAATTGTACGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCAATGGGGGTGGCAGGTGGTGCCACTGGGAGTGAAAGCATTGGCCAGAGGTTGATCAAGAGGAGGAGATTAGTTTCTGGGGTTGGATTGAATTTGCAAAAGTCTAAGTGCAGAGTTGTTTCCACCAAAGATCTGAGGGCTAAATCTTGTTATCCTATGGGGTTGAGAGGGTTGAACAATCTGGGTAGCACGTGCTTCATGAACTCTGTGCTGCAAGTGCTGCTTCACGCACCTCCGTTCAGGGACTATTTCCTGAGTGGTGGATACCGTTTGGAAGCTTGCCATCACAGAAGAACCATGGATCGGGTGTGTTTGCTTTGTGATGTCAATGCTATTTTTTCAGCTGTGTATTCGGGGGATCGAAATCCATATAGTCCTGCTCAGTTTCTCTACAGcTGGTGGCAGCATTCAGCAAATTTGGCGAGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCAATCCATGAGAAAGAGAGCAAAGCAAGGAACGGAAGCAAAGGTAATGGAGACTGTCAATGCATTGCTCATAGGGTGTTCTATGGGTTATTGAGATCAGATGTTACCTGTATGGCTTGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGATATTTCACTTAACTTGGGCACCAGTGTCTCTTCAACGGAAAAGGGTGAAAAACCTACCAAACGGAATGAGGATGATAGTATGTCTACACTTTCGGGTTGTTTAGATTTGTTCACAAGGCCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCAGAATTGTCAGGAAAGGCAGGACTCATTCAAGCAAATGTCCATTAGAAAGCTTCCATTAGTACTTAGTTTGCATGTAAAACGATTTGAGCACTCTTTTGTCAAGAAGTGTTCAAGAAAAATAGATCGCTACCTACACTTTCCATTTTCCTTAGACATGACTCCATATTTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATTTATAGTTCTGGGGGAGATGAATCAGATATGCTTTCTGAGTTCGAGATTTTTGCAGTAGTGACACATTCGGGGACACTTGAGTCTGGCCATTATGTTTCGTTCGTGCGTTTAAGGAATCAATGGTACAGATGTGATGATGCTTGGATAACTGAGGTTGATGAGGCTACAGTCAGAGCTTCACAGTGTTACATGATTTTCTATGTGCAAAAAAAACTGTACAATAAAGCAAATGAAGACCTGAGTCACCTGCCGAATTCCCCCGGAAGAGAGCTATTTCTTCCTATTGCTGGGTGTTGCTAG 1662 0.4404 MFPRNPSYTNPEPCQHLLEYKLKHGFNGYKAIQKLLVISPIGKTSVKKPNTKLPRCSFCNGCEGRFYLCLICSSFSCLDHTLLHPQSETGHAVFVDIERAELYCGVCRDQLYDPDFDQVVMSKHSMGVAGGATGSESIGQRLIKRRRLVSGVGLNLQKSKCRVVSTKDLRAKSCYPMGLRGLNNLGSTCFMNSVLQVLLHAPPFRDYFLSGGYRLEACHHRRTMDRVCLLCDVNAIFSAVYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKESKARNGSKGNGDCQCIAHRVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLGTSVSSTEKGEKPTKRNEDDSMSTLSGCLDLFTRPEKLGSDQKLYCQNCQERQDSFKQMSIRKLPLVLSLHVKRFEHSFVKKCSRKIDRYLHFPFSLDMTPYLSSSILRARYGNRIYSSGGDESDMLSEFEIFAVVTHSGTLESGHYVSFVRLRNQWYRCDDAWITEVDEATVRASQCYMIFYVQKKLYNKANEDLSHLPNSPGRELFLPIAGCC 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0517 553 MobiDBLite consensus disorder prediction 342 361 - -
Ssu5g0517 553 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 6 549 - -
Ssu5g0517 553 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 549 - -
Ssu5g0517 553 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Ssu5g0517 553 Gene3D Cysteine proteinases 174 530 - -
Ssu5g0517 553 Pfam Ubiquitin carboxyl-terminal hydrolase 181 521 IPR001394 GO:0004843|GO:0016579
Ssu5g0517 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 129 IPR013083 -
Ssu5g0517 553 ProSiteProfiles Zinc finger UBP-type profile. 27 130 IPR001607 GO:0008270
Ssu5g0517 553 SUPERFAMILY RING/U-box 13 118 - -
Ssu5g0517 553 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 181 196 IPR018200 GO:0004843|GO:0006511
Ssu5g0517 553 SUPERFAMILY Cysteine proteinases 176 523 IPR038765 -
Ssu5g0517 553 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 180 524 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0517 Ssu-Chr5 11061741 11064425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0517 181 533 Miscellaneous Gene Families AT2G24640 30.220 1.03e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0517 K11366 - gmx:100806347 1058.51