Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0516 ATGCTTTCTAGGGAAATGCATTGGAGCTTTGTATTTGGGGTCGTGGTTGTTTATGGAATAAGCCAGGGACTTGGTGGAGCTCTTGCTCAAGTTGGCACTAAGTATTACATGAAAGATGTTCAGAAGGTGCAGCCATCTGAGGCACAGGTTTATGCAGGAATCACATCCATTCCTTGGATTGTGAAGCCTCTGTGGGGTCTTCTCACTGATGTTCTCCCATTTTTTGGGTATCGCAGGCGaccttatttcatttttgctGGTTTCATAGGAGTGATTGCCATGCTTTTGTTATCTTTGCATGAAAACCTGCATCTTGTGTTGGCCCTATTGTCATTAACAGCTGGGAGTGCTGGGGTGGCAATAGCAGATGTGACCATTGATGCCTGTGTGGCACAGAACAGTATCTCTCATCCCTCACTCGCCACTGACATGCAAAGTTTATGTGCCTTCAGTTCTTCTGTTGGAGCACTAATTGGATTCTTCATTAGTGGTATCTTTGTTCACCTTATAGGCCCTATGGGGGTGTTTGGTTTGATGACTATCCCAGCTGGACTTGTAATTTTGGTTGGTTTTCTGCTTGATGAGCCTCGTATGCACAACACATCTTACAGACAGgtgaaacaaaattttcttgatGCTGGCAAGGCTATGTGGACTACGTTGAGGAGTGAAGATGTATGGGGGCCTTGTTTATACATGTATTTATCCCTTGCATTGAGTTTGGATATCCGTGAAGGAATGTTTTATTGGTATACAGACTCAAAGGGTGGACCATCTTTCTCTCAGGAGAGTGTcggttttatattttcaattagttCAGTGGGGGCCCTTTTAGGTGCAATACTATACCAGTATGCTCTAAAGGATTATGCATTCAGGAACTTGCTCTTCTGGACTCAGTTGCTTTATGGTTTGTCAGGGATGCTTGATCTGATTCTGGTCTTGAGATGGAACCTTAAGTTTGGCATACCAGATTACTTCTTTGTTGTGATTGTTGAAAGCATAGCTCAAATGACTATTAGGCTCAAGTGGATGCCTATGCTTGTACTGAGCTCAAAGCTTTGTCCCTCAGGTATTGAAGGCACCTTTTTTGCTCTCCTAATGTCAATTGATAATGTTGGACTTCTCTCAGCATCATGGGGTGGAGGCTTTGTACTCCACATACTAAGGATCACAAGAACAAGGTTTGATAATATTTGGTTTGCTATTTTGATCCGGAACATTTTAAGGATTACTCCACTTGGACTGCTGTTTTTGGTGCCTAGAGCTGACCCCAACTCTTCCATTCTTCCAACTGAAAGCATGAATTCAAAGGTGACTATTGACACCTCAGACACCAAAAATGTTGAATTGGAGTCCCTTGTACACAGTGTTGATGGTAAATAG 1386 0.4156 MLSREMHWSFVFGVVVVYGISQGLGGALAQVGTKYYMKDVQKVQPSEAQVYAGITSIPWIVKPLWGLLTDVLPFFGYRRRPYFIFAGFIGVIAMLLLSLHENLHLVLALLSLTAGSAGVAIADVTIDACVAQNSISHPSLATDMQSLCAFSSSVGALIGFFISGIFVHLIGPMGVFGLMTIPAGLVILVGFLLDEPRMHNTSYRQVKQNFLDAGKAMWTTLRSEDVWGPCLYMYLSLALSLDIREGMFYWYTDSKGGPSFSQESVGFIFSISSVGALLGAILYQYALKDYAFRNLLFWTQLLYGLSGMLDLILVLRWNLKFGIPDYFFVVIVESIAQMTIRLKWMPMLVLSSKLCPSGIEGTFFALLMSIDNVGLLSASWGGGFVLHILRITRTRFDNIWFAILIRNILRITPLGLLFLVPRADPNSSILPTESMNSKVTIDTSDTKNVELESLVHSVDGK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0516 461 PANTHER FOLATE-BIOPTERIN TRANSPORTER 2-RELATED 1 460 - -
Ssu5g0516 461 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 1 460 IPR039309 -
Ssu5g0516 461 SUPERFAMILY MFS general substrate transporter 11 421 IPR036259 -
Ssu5g0516 461 CDD MFS_FBT 20 418 - -
Ssu5g0516 461 Pfam BT1 family 232 424 IPR039309 -
Ssu5g0516 461 Pfam BT1 family 22 189 IPR039309 -
Ssu5g0516 461 Gene3D MFS general substrate transporter like domains 5 405 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0516 Ssu-Chr5 11032252 11037117 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0516 - - ccaj:109816000 832.402