Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0498 ATGGACGAACAACGACAACAACCTCAACCCAACAACGCTTCCGACACCGACCCTTTCCTCCTCAACTACACCACCTCGGATCTCCGAACCGCTTCGGAGTTTCTCGCCACGTGGCTCCCCTTCCTCTCCCGAGATCTCTGCACCCGCTGCACCCAATCCCTCTCCGATCGCATCCGCTCCATCGACCCAGGTGTAGACCCTCAAAACGACAACCCCAACGAGGAAAACTGCGACAACTGTGACGCGCATTCTCTTGGGAGTTGGAAAGACGGGGCGGAACCCAATTCCACTGCGGAGGCTCCCATCGCAAGAGTTTCTTGGGCCGACATGGCCCAAGAAGACGACGAATTCGGCGAAGAAGAGCacgagaataataataataacaacaacaacaacaacagtaacaATGGTGGGAGTGTTGTGGCGGGTGATTCGAATGCTGGTGCTGATGTGGCTAAGGTTGTGGCTGAGAAGCCTACTTTGCCGAGGGAGCAGAGGGAGTACATTAGGTTCATGAATGTGAGGCGCGAGAAGGACTTCATTTGCTTTGAGAGGGTTCATGGGAAGCTTGTGAACATTCTTGAAGGGCTTGAACTCCACACGGGAATTTTCAGCGCTGCTGAACAGAGGAGGATTGTTAGTTATGTTGCTTCACTTCAGGAGCAAGGCAAAAAGGGAGAATTGAAAGATCGGACGTTTTCAGCTCCTCAAAAGTGGATGAGGGGCAAGGGACGTCAAACCATCCAATTTGGGTGTTGTTACAATTATGCAGTGGATAGAGATGGTAATCCACCTGGTATTCTTCAGCATGCAATGGTTGATCCTATACCTGATCTTTTCAAGGTCATCATTCGACGCCTGATCAGGTGGCATGTACTCCCTCCTACCTGTGTGCCAGATAGTTGCATTGTTAATATCTATGAAGAAGGGGACTGCATACCTCCACATATAGATAACCATGACTTTGTTCGACCATTTTGCACTGTCTCATTTCTCAGTGAGTGCAATATAGTGTTTGGATCAAACTTAGAGATTTTAGGCCCTGGTGAATTTGATGGCTTGATTGCTATTCCGTTACCTGTGGGATCTGTACTTGTCTTAAATGGGAATGGAGCTGACGTGGCTAAGCATTGTGTGCCTGCAGTTCCTACGAAAAGGATATCAATCACATTTAGAAGAATGAAGGTATCCAAGCGGCCTTTTGGGTATGTTCCAGAATCCGATCTTCAGGGGATCCAACCATTGGCCTATGAAGTTGACCAGGAAAAGAAATCAAGTGGGCACAGACCTAGTCGTCATACGAAGAGATATAAAGACAGGAGAGGAGGTGGCAGGAATGATGCAATGGGATCTGCAACTAGAAATGATAGGTTCTCGGAGCCCCGTGACTCGAATCTAAGTTCACCAAGATCTACAAACAGGTGGAGTAGGGTAAAGCCTGGTAGTTGA 1449 0.4741 MDEQRQQPQPNNASDTDPFLLNYTTSDLRTASEFLATWLPFLSRDLCTRCTQSLSDRIRSIDPGVDPQNDNPNEENCDNCDAHSLGSWKDGAEPNSTAEAPIARVSWADMAQEDDEFGEEEHENNNNNNNNNNSNNGGSVVAGDSNAGADVAKVVAEKPTLPREQREYIRFMNVRREKDFICFERVHGKLVNILEGLELHTGIFSAAEQRRIVSYVASLQEQGKKGELKDRTFSAPQKWMRGKGRQTIQFGCCYNYAVDRDGNPPGILQHAMVDPIPDLFKVIIRRLIRWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLEILGPGEFDGLIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRRMKVSKRPFGYVPESDLQGIQPLAYEVDQEKKSSGHRPSRHTKRYKDRRGGGRNDAMGSATRNDRFSEPRDSNLSSPRSTNRWSRVKPGS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0498 482 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 298 395 IPR005123 -
Ssu5g0498 482 SUPERFAMILY Clavaminate synthase-like 193 394 - -
Ssu5g0498 482 Pfam 2OG-Fe(II) oxygenase superfamily 197 392 IPR027450 -
Ssu5g0498 482 PANTHER RNA DEMETHYLASE ALKBH9B 12 80 - -
Ssu5g0498 482 PANTHER RNA DEMETHYLASE ALKBH9B 89 476 - -
Ssu5g0498 482 Gene3D - 181 399 IPR037151 -
Ssu5g0498 482 MobiDBLite consensus disorder prediction 419 482 - -
Ssu5g0498 482 MobiDBLite consensus disorder prediction 124 142 - -
Ssu5g0498 482 MobiDBLite consensus disorder prediction 464 482 - -
Ssu5g0498 482 MobiDBLite consensus disorder prediction 66 80 - -
Ssu5g0498 482 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 12 80 IPR044842 GO:0003729|GO:0006402|GO:0032451
Ssu5g0498 482 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 89 476 IPR044842 GO:0003729|GO:0006402|GO:0032451
Ssu5g0498 482 MobiDBLite consensus disorder prediction 59 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0498 Ssu-Chr5 10537807 10542530 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0498 K10767 - gmx:100797674 791.956