Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0496 ATGGAACGTAGTTTGAAAAGAAAGTCTCCAGAGAGTGGAGAGCATCTACCCTTCGACAGCTTTTCTCTGGATGACCTTAATGAAGATCTCTTGGAAAGGGTACTTTCATGGCTACCAACTTCCTCATTCTTCCGCCTCACTTCTGTGTGCAAAAGATGGAAGTCAGCTGCTGCGTCTGTGAGTTTCAAGCTTGCCTGCTCACGCGTTCCTTCGCGGGATCCTTGGTTTTTGATGGTTGCTCCCAGCCTCAACCAATCTATTGTCTTTGACTCTGCTGAAAACAGTTGGAAAAGACTCAATCACCTGCGTCTTCCGCTCGAAGACCCTAACATAAGCTGCATGCCTGTTGCAGCCTCCGGTGGCCTGGTTTGCTACCGCAAACTGTCAGGAAACTTCGTTGTGTGCAATCCCGTGACCGGGTCTTGTTGTGAACTCCCTCCATTGCATTTTGCCCCAGAAAATCAATCTCTCAACGCCGTTGTGATGAGTACAACTTTCAAAGATCAAATCTCCTACAAGATTGTGTTAGTCTTTGGTGAACTCCCTAATCTTTTGTTTAAAGTCTACAACTCAAGCTCCGGCTGTTGGGAAGATGAGACTGCACTGAGGAGGAAGGATGATGATAATTCCATTGATTGTGACTCAACTGACGACAATGTTGTGTACTTCCTTAGCAAGGCGGGAACAGTGGTGGCAAGTAGCATGCAGAGAAGCCCATCTAAGCAATATTCATCGGTTATTACTAACAAAGATGGTCAGGAGACAGTGTATTTTCTCAGCTCCTCAGGGACAGTAGTAGCTTGCAATTTGACATGCAAGTGCTTCTTTGAGTACCCCAGGTTGTTGCCTGTTTTCAGTGAGTACTCCATTGATATTGTGGAGTGTGGCGGCGAGATGCTGGTTGTTTTGTTATCAGAATTCTTGGAAAGCACAAGTCTTAGGGTGTGGAAATACGACGACGCCAATCGAAGCTGGCAACAGATTGCTTCAATGCCTGCAGCAATGTCTCAAGAGTGGTATGGAAAGAAGGCAGATATTAACTGTGTTGGAGCTGGTGATCAGATATTTATATGCTTGAACTCCCCTGAGCTGTGTACTTACATTCTGTGTGACTTGGTGACCAACAAATGGACCGAGTTGCCGAAATGTTGCTTAAATGGAGAAGTCATGGAGTTCATGTCTGCCTTTTCGTTTGAGCCCAGGATAGAGGCTTCTCTATGA 1221 0.4586 MERSLKRKSPESGEHLPFDSFSLDDLNEDLLERVLSWLPTSSFFRLTSVCKRWKSAAASVSFKLACSRVPSRDPWFLMVAPSLNQSIVFDSAENSWKRLNHLRLPLEDPNISCMPVAASGGLVCYRKLSGNFVVCNPVTGSCCELPPLHFAPENQSLNAVVMSTTFKDQISYKIVLVFGELPNLLFKVYNSSSGCWEDETALRRKDDDNSIDCDSTDDNVVYFLSKAGTVVASSMQRSPSKQYSSVITNKDGQETVYFLSSSGTVVACNLTCKCFFEYPRLLPVFSEYSIDIVECGGEMLVVLLSEFLESTSLRVWKYDDANRSWQQIASMPAAMSQEWYGKKADINCVGAGDQIFICLNSPELCTYILCDLVTNKWTELPKCCLNGEVMEFMSAFSFEPRIEASL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0496 406 PANTHER F-BOX/KELCH-REPEAT PROTEIN 16 405 - -
Ssu5g0496 406 SUPERFAMILY F-box domain 18 103 IPR036047 GO:0005515
Ssu5g0496 406 SUPERFAMILY Galactose oxidase, central domain 73 334 IPR011043 -
Ssu5g0496 406 Pfam F-box domain 23 63 IPR001810 GO:0005515
Ssu5g0496 406 SMART fbox_2 26 66 IPR001810 GO:0005515
Ssu5g0496 406 ProSiteProfiles F-box domain profile. 20 65 IPR001810 GO:0005515
Ssu5g0496 406 Gene3D - 17 62 - -
Ssu5g0496 406 PANTHER F-BOX PROTEIN FAMILY, ATFBX13-LIKE PROTEIN 16 405 - -
Ssu5g0496 406 Gene3D - 75 399 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0496 Ssu-Chr5 10514246 10515466 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0496 - - gmx:100797130 751.125