Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0495 ATGCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAGCCTTCCCTGAGACTTTAAATCTAAGCCCTTACATGAGTGAAGCTGGAGATGGATCTAATATTTATAAGCTATATGCTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCCATGGAAACTGGTATAGGATTGATGACTGGAAGGTTATGACTGTGGAGTTGGAAGAGGTACTTTCTCAGGGAGCGTACATGCTCTTGTATAGCAGGTGTAGTGCCCGGCCATCAGGCCTTCAAATTCAAACTAATGAATCTTCAGGGATAGCAGAAGTGCAAACAACTGAAGTGGAAGTGGAGCCTGGACAAACTGAACGAGATGAATGCCTCTCAAATATGAAGACTTTGACTTATAGTAGAGGTTCTGAGGTTTTGTTATCTGATATTAATCCAGAATTGAAAGTTTCTTCCAGCTATGACTGCGAGTCTTCTGCTGGATTGAACACACAAGCCAAAAGAGAGCAGTTTGAGGATATGGACATGATGGATGTTGATTCAAATGGCATTGCGAATGAGATTTCTTGTATTGCTGCTGACTCATCTTATGTGCCCATTTCTCGAACCGTAGGAGATTTGGGGGATGAAGATATGGTAAGATCTTTAGAAGAGACTTCAGGCTGCAAGGAAGGGCAAGATGTTAGTGATATGGCTAGGTATGGTCCTTGTCCGGGTTTACCAAATGTCTCTTCCTTCCTTGATAAGCATTCTTCTGTTTCAAGGGATCATCAAAACGTGGAAGATTCAGAACACACAGATGTGGTTAAATGCAAGTTGATTGCAGCTAAAGATAATGCATATTATGGTAATGGATATGTCGATGCAAACAAGTCCGCTATTCCAGTTGAAGATGCTGGCACACAATTTTCTGGCGTTGGTTCTTTTCCCGCTGAAAATGACAAAGGAAATGGAATTAAGAAAGTGGAAATATCAGCTGACATCTAG 1011 0.4075 MQSGRFGKLNKRVAFPETLNLSPYMSEAGDGSNIYKLYAVVVHIDMLNASFFGHYICYIKDFHGNWYRIDDWKVMTVELEEVLSQGAYMLLYSRCSARPSGLQIQTNESSGIAEVQTTEVEVEPGQTERDECLSNMKTLTYSRGSEVLLSDINPELKVSSSYDCESSAGLNTQAKREQFEDMDMMDVDSNGIANEISCIAADSSYVPISRTVGDLGDEDMVRSLEETSGCKEGQDVSDMARYGPCPGLPNVSSFLDKHSSVSRDHQNVEDSEHTDVVKCKLIAAKDNAYYGNGYVDANKSAIPVEDAGTQFSGVGSFPAENDKGNGIKKVEISADI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0495 336 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 95 IPR028889 -
Ssu5g0495 336 Gene3D Cysteine proteinases 1 100 - -
Ssu5g0495 336 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 279 - -
Ssu5g0495 336 Pfam Ubiquitin carboxyl-terminal hydrolase 8 92 IPR001394 GO:0004843|GO:0016579
Ssu5g0495 336 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 2 279 - -
Ssu5g0495 336 SUPERFAMILY Cysteine proteinases 3 97 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0495 Ssu-Chr5 10509668 10512143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0495 1 119 Miscellaneous Gene Families AT2G24640 65.546 1.50e-51 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0495 K11855 - gmx:100799652 562.377