Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0478 ATGCAGAGATTCAAAGCTCTGCTACCGCAAAGTAGGTTCTCACTTCGCACTCTCTGTTCTCATCGTCGAGCATTCTCTGCTCAACCAAGTTACGCAGAGTACGACGACGACGATTCTCAGCAACAGATTTTAGTTGAAGGAAGAGCGAAATCGCGAGCAGCTATTCTCAACAGGCCTTCTTTGCTGAACTCGCTCACTGCTTCAATGGTTGCTCGATTGAAGAGGCTGTATGATTCCTGGGAAGAGAACTCTGATATTGGCTTTGTTTTGATGAAGGGTAGTGGTAGAGCTTTCTGTTCTGGTGCAGATGTTGTTAGGCTGTATCACTCACTCAATGAAGGAAATACTGATGAAGCTGAACaggttttcaaaacattatattCGTTTGTGTATCTTCAAGGGACATATCTTAAACCACATGTTGCCATTTTAGATGGAATAACAATGGGATGTGGATCTGGAATTTCTCTACCAGGGATGTTTCGTGTGGTAACTGATAAAACTATTTTTTCTCACCCAGAGGCTCAAATAGGTTTCCACCCAGATGCAGGAGCTTCTTATATTTTGTCTCGTCTACCTGGCTACTTAGGGGAATACTTGGCCCTTACAGGAGATAAGCTTAATGGTGTTGAAATGATTGCCTGCCGCCTTGCTACTCATTATTCACTAAATGCAAGGCTTGCTTTGCTTGAAGAACGCCTTGGTAAACTGCTCACAGATGAACCTTCTGTTGTGGAAGCATCCCTTGCACAGTATGGTGATCTTGTTTATCCAGACAGGAGCAGTGTCCTTCACAGGATTGATACTATTGATAGATGTTTCAGTCACGAAACTGTGGAGGAAATTATTGAAGCTTTGGAGAAAGAGGCTGCTGAGTCTTATGACGAATGGTGCTCGACTACTCTAAGGAGAATAAGAGAAGCCTCCCCGttgagtttgaaaattattttacgaTCTATACGTGAAGGTAGATTTGAAACTCTTGATAAATGTCTTGTACGTGAGTACCGCATGTCCCTTCGTGGAACTTCTAAGCATGTCTCCTCTGATTTCTTTGAGGGTGTTCGAGCAAGAATGGTTGATAAAGATTTTGCACCAAAGTGGGACCCACctagtttaaaagaaatatcagaAGACATGGTTGAATACTATTTCTCTCCGTTAAGTGAAGTCGAGTCTGAGCTAGTGCTGCCAACGGCTTTGCGAGAACCTTACATGTGA 1221 0.4161 MQRFKALLPQSRFSLRTLCSHRRAFSAQPSYAEYDDDDSQQQILVEGRAKSRAAILNRPSLLNSLTASMVARLKRLYDSWEENSDIGFVLMKGSGRAFCSGADVVRLYHSLNEGNTDEAEQVFKTLYSFVYLQGTYLKPHVAILDGITMGCGSGISLPGMFRVVTDKTIFSHPEAQIGFHPDAGASYILSRLPGYLGEYLALTGDKLNGVEMIACRLATHYSLNARLALLEERLGKLLTDEPSVVEASLAQYGDLVYPDRSSVLHRIDTIDRCFSHETVEEIIEALEKEAAESYDEWCSTTLRRIREASPLSLKIILRSIREGRFETLDKCLVREYRMSLRGTSKHVSSDFFEGVRARMVDKDFAPKWDPPSLKEISEDMVEYYFSPLSEVESELVLPTALREPYM 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0478 406 CDD crotonase-like 56 220 - -
Ssu5g0478 406 Coils Coil 276 296 - -
Ssu5g0478 406 SUPERFAMILY ClpP/crotonase 51 371 IPR029045 -
Ssu5g0478 406 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-LIKE PROTEIN 2, MITOCHONDRIAL 28 406 - -
Ssu5g0478 406 Pfam Enoyl-CoA hydratase/isomerase 53 385 IPR045004 -
Ssu5g0478 406 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 28 406 IPR032259 GO:0003860
Ssu5g0478 406 Gene3D - 37 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0478 Ssu-Chr5 10017428 10028413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0478 20 406 Acyl Lipid Metabolism Gene Families AT4G31810 71.795 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0478 K05605 - gmx:100808892 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0478 5 10017428 10028413 Ssu5g0478 5 10017428 10028413 ECH