Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0462 ATGATGAAATCTAAGTTTGAGTGTGGAAACCAAGATGCTAATGTTGATGATGGAGAAATTAATTGGAATAATGGTCAGCTACTGCTGCAAGATGTTCAAGAAATAAGCAAAGCTCTTTATTTGAGCAATAACCCTTCTAGGCCTTCCTTCTCCTCGGTCCATAATCGATCCAAGTCTGCCGGAAAAGCCCATTTGTCAAAAGCTGAAGTTTCCTTAACCCCAGGATTTCTAAAGGAAGATCTGTTGCCTAAGGACAAGAAGTTGTCTTCAGCATGGAATTGGAAGAAGCCCTTGAAAGCTTTGACCCATATTGGTGATCAAAAGTTCAAATGTTGCTTTAACCTTCATGTCCACTCAATTGAGGGTCTGCCTTTGAATTTTGACGGCGTTAGGTTGTGTGTGCATTGGAAAAGGAAGGGCAGCATTTTGCAGACGCCCCCATCTAGGGTTTTCCAGGGTGTTGTGGAGTTCAATGAAACTTTGAGGCATGGATGTTCTGTTTATGTTAGCCGTGCTGTGTCTGGTCACTCTGTCAAGTATGAGTCTAAGCGTTTCTTGATTTATGCCTCTATTGTAGGGGCACCTGAACATGACATAGGGATCCATCAGGTTGATCTCACAAGGCTTTTACCTGTGACTTTAGCAGAGTTAGGGGGTGATAGAAGCTCAGGGAAATGGAGCACAAGTTTTAGGTTGGCAGGAAAAGCTGTAGGAGCTAGCCTAAATGTTAGTTTCAGCTATCAAGTAATGAAGGATGAGTTAATGGAATTTGGTGGTGATAATTTGAATGTTCTCAACCTTGTTAATCTGAAGCCAGGCAGGCCAAGCAGCACAAGCAGTGTTATGGATTTTAGTCCTATCCCACTTCATTCTGATGATGTGATTTTATCCCGTGAAGCATTGATGAATTCTGGCTCAAGTCTTTCCAAATCAATCAGTTTCCTATATCAAAAATTTGATGAGGGGAACTTCCTTAATTCAGCACAGGCAGACTCGGAACATTTTGAACCACTTAAATCCCATGTTGCTACAGAATCAGAGTTACCTCAAGAATCAAATCAACTTGAACCTGATGACACTGAATTTTCCATTATCAAAAAACAAGTGGAAACATTGGAAGGGGATTCCTTGAAGCTTGATCAGACAGGAAATCAAACAGTTGATTTGTCAATAGTTGAAATTATTAATGTGGATGATATTATTAAGGATGATGACATATTTGTTGACAAGAACACAAGATGTGATTCAATGGATAACATATGCACTAGTGGTGTAAATGGGACTACGGCAGATGACAGCAAACATAAATGCAGTAGTTCATGTGTCAGTATAACTTGCATCAAGGCTGTAGATATACTTCCTGAGACAACAGACTTTCTTGACCAAGAACACTATGTtaatgttaaatcaaattataaagcaCATAGAATGGCAAAAAAATCAAGTAGCTTGGATTTTGTCACTGAGTCTATTGCTAATGATTTCTTAAACACGCTGGCCATGGAGAgtggttcatttggttcaagTTGTGATGGTGATCCCCAGTCTCCCAGAGAGATGCTTTTAAGACAGTTTGAAAAAGAGGCTCTAGCTTCAGGTAACTTCACTTTTGATTTCAATGCAAATGAAGAGGAATTGGGGACAGATACACTTGGACATAGCTTTGGGGATTGTGCTGTGGATTCGgatttgtctttatttattcaAGCTGCTGAAGAGGAGCATGCAAGGGAGAATCAGTTATTAATGCAGAGAAGGAAGGCCAAAATTCTTGAAGACCTGGAGACTGACTCATTGATGCAACTGTGGGGTTTAAACGAGAGGGACTTTGAAAATTCTCTGGGAACTTGTTCTGGTGGATTTGGAAGTCCAGTTGAACTACCCAATGAAGAATCATCCATATTACCTTCAATAGGACAGGGGCTTGGTTCATTTGTTCAAATTATGGGTGGAGGCTTTTTGAGGTCCATGAGTCCTTCCCTGTTCAGGAATGCTAAAAATCGTGGGAACCTCATCATTCAGGCTTCTAATCCAGTTGTTCTACCAGCAAAAATGGGTAATGATATATTGGAGATATTGCAGCATGTGGCATCTGATGGGGTTGAAGAGCTGTGTGATCATATCTATAAATTAATGCCTTTGCAAGATATCACTGGAAAATCCATTGAGCATGTTGTGTGGGAAGCCACAAGTGACAAAGGGGCTCCTGGAAGGCAGGGGTCGTGGCAGCATGATTTATTTGAAGAATTTCCGTGTGATTATTTAACAGATGAAGGCATGAGCTTGGAGACTGTCTCTCTTGAAGCTATAGCTCCTATGACTGTTAATAAGATTGAAGCCCTTTTCATAGAAGGGTTGAGAATACAGTCTGGCATGTTGTATGAGGAGGCACCATCACACATCCGTCCCCAACATTCAAAGACGCCTGCCATTGAAGGCAGAAGAGCCAACTGGAGAGGGTTTCCCACGTCAGAAAGAGTTGCTAAATTGAAATTAGAAGATAGTGGAGAAAGTGGCAATGGTGATAATGGATTGATGGGGCTGTCAATAACATTAGATCAGTGGTTGAAATTGGATTCTGGCATTATTGAAGGAGATCAGAATTCAGAGCAAATTTTGAAGACTCTTAAAGCACACCATTCTAAAATCACAGAGTTAGATGATGAAGTGTTGAAAAATACCATGGACTGGTTAAAATCATATGGCAGAAAGCACGGACTCTTGGGGAACCACCTAACGGTGGCTTTTATGATCCAGCTTAGAGATCCTCTACGAAATTATGAGCCAGTTGGCATTCCAATGCTGGTTTTGACTCAGGCGGAAAGAGTTCACATACATGCAATGCAGCAAGATAACAGCAATTTTCttgataaaaaggaaaagggaaaggAGAATGAGGCCTTGCTAAATGAGACAAGTAGCAAGAGTATGGAAAATACGAATACTGATAACGACACCCCTCATTTTAGATTCAAAATCAGAGAGATTCATCTTTCAGGTGTCCTTACCAAAGCCGGAAGCAGGCAACTTTGGAGTACTGCAGCTCAGCAACAGTCCGGGTTCCGATGGTTGCTTGCCAGTGGCATGGCCGGTACTGGCAAACATTCATCTTCAACATCAAAGGCAATTGTATTATCATCTCCACTGTTTGCCAAGAAGTTGCTAAATGAGGATGTCCTATGGAGCATTTCTTATGTTAATAGTATCACGGGGACTAATAGTAAAGAGCTGCCAGCTGAAAATGTACACATTCGGAACCCTGATATCATCTTCCCAAGTTGA 3282 0.4034 MMKSKFECGNQDANVDDGEINWNNGQLLLQDVQEISKALYLSNNPSRPSFSSVHNRSKSAGKAHLSKAEVSLTPGFLKEDLLPKDKKLSSAWNWKKPLKALTHIGDQKFKCCFNLHVHSIEGLPLNFDGVRLCVHWKRKGSILQTPPSRVFQGVVEFNETLRHGCSVYVSRAVSGHSVKYESKRFLIYASIVGAPEHDIGIHQVDLTRLLPVTLAELGGDRSSGKWSTSFRLAGKAVGASLNVSFSYQVMKDELMEFGGDNLNVLNLVNLKPGRPSSTSSVMDFSPIPLHSDDVILSREALMNSGSSLSKSISFLYQKFDEGNFLNSAQADSEHFEPLKSHVATESELPQESNQLEPDDTEFSIIKKQVETLEGDSLKLDQTGNQTVDLSIVEIINVDDIIKDDDIFVDKNTRCDSMDNICTSGVNGTTADDSKHKCSSSCVSITCIKAVDILPETTDFLDQEHYVNVKSNYKAHRMAKKSSSLDFVTESIANDFLNTLAMESGSFGSSCDGDPQSPREMLLRQFEKEALASGNFTFDFNANEEELGTDTLGHSFGDCAVDSDLSLFIQAAEEEHARENQLLMQRRKAKILEDLETDSLMQLWGLNERDFENSLGTCSGGFGSPVELPNEESSILPSIGQGLGSFVQIMGGGFLRSMSPSLFRNAKNRGNLIIQASNPVVLPAKMGNDILEILQHVASDGVEELCDHIYKLMPLQDITGKSIEHVVWEATSDKGAPGRQGSWQHDLFEEFPCDYLTDEGMSLETVSLEAIAPMTVNKIEALFIEGLRIQSGMLYEEAPSHIRPQHSKTPAIEGRRANWRGFPTSERVAKLKLEDSGESGNGDNGLMGLSITLDQWLKLDSGIIEGDQNSEQILKTLKAHHSKITELDDEVLKNTMDWLKSYGRKHGLLGNHLTVAFMIQLRDPLRNYEPVGIPMLVLTQAERVHIHAMQQDNSNFLDKKEKGKENEALLNETSSKSMENTNTDNDTPHFRFKIREIHLSGVLTKAGSRQLWSTAAQQQSGFRWLLASGMAGTGKHSSSTSKAIVLSSPLFAKKLLNEDVLWSISYVNSITGTNSKELPAENVHIRNPDIIFPS 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0462 1093 ProSiteProfiles C2 NT-type domain profile. 101 249 IPR019448 -
Ssu5g0462 1093 MobiDBLite consensus disorder prediction 46 66 - -
Ssu5g0462 1093 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 107 251 IPR019448 -
Ssu5g0462 1093 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 2 2 1093 IPR039823 -
Ssu5g0462 1093 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1093 IPR039614 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0462 Ssu-Chr5 9486660 9490066 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0462 - - gmx:102659940 1800.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0462 5 9486660 9490066 Ssu5g0462 5 9486660 9490066 ECH