Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0454 ATGGATTTGAGGGTGATGGGGTTGGAGTCTCCGTTGTTCCACACTCTGCGCCACATGATGGACCTGTCAGACGACGCTGCAGGGGACAAGACATACAATGCTTCGACACGGTCATACGTTCGGGACGCGAAGGCAATGGCTGCAACACCTGCGGATGTGAAGGAGTGTTCCAACTCCTACGTGTTCGAGATCGACATGCCGAGGTTGAAATCTGGGGACATAAAGGTTCAAGTGGAAGATGATAACGTGCTTCTGATTAGTGGGGAAAGAAAGagggaggaagagaaagaaggggCAAAGTATGTGAGGATGGAGAGAAGGGTTGGGAAGTTCATGCGCAAGTTTGTGCTCCCTGAGAATGCCAACACCGACGCCGTTTCAGCAGTGTGTCAAGATGGGGTGCTTAGTGTCACCGTGCAGAAATTGCCTCCTCCTCAACCTAAGAAGCCAAAGACTATTGAGGTTAAGGTTGCTTGA 477 0.4843 MDLRVMGLESPLFHTLRHMMDLSDDAAGDKTYNASTRSYVRDAKAMAATPADVKECSNSYVFEIDMPRLKSGDIKVQVEDDNVLLISGERKREEEKEGAKYVRMERRVGKFMRKFVLPENANTDAVSAVCQDGVLSVTVQKLPPPQPKKPKTIEVKVA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0454 158 SUPERFAMILY HSP20-like chaperones 30 150 IPR008978 -
Ssu5g0454 158 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 157 - -
Ssu5g0454 158 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 157 - -
Ssu5g0454 158 Pfam Hsp20/alpha crystallin family 53 156 IPR002068 -
Ssu5g0454 158 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 42 158 IPR002068 -
Ssu5g0454 158 Gene3D - 7 157 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0454 Ssu-Chr5 9401993 9402469 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0454 K13993 - gmx:100500503 254.603