Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0450 ATGGATTTCAGAACGATAGGTTTGGAGTCTCCGTTGTTCCACACGCTGCGGCATATGATGGACGTATCAGACGACGCTGCAGGGGACAAGACACACAACGCTCCGACACGGTCATACGTTCAGGACGCGAAGGCAATGGCTGCAACACCTGCGGATGTGAAGGAGTGTCCCAACTCCTACGTGTTCGAGATCGACATGCCGGGGGTGAAATCTGGAGACATAAAGGTTCAAGTGGAAGATGACAACGTGCTTCTAATTAGTGGGGAGAGAAAGagggaggaagagaaagaagggtCCAAGTATCTCAGAATGGAGAGAAGGGTTGGGAAGTTCATGCGCAAGTTTGTGCTACCTGCAAATGCCAACACTGACGCAATCTCTGCAGTGTGTCAGGATGGGGTGCTTAGTGTCACCGTGCAGAAATTGCCTCCTCCTGAACCTAAGAAGCCAAGGACTATAGAGGTTAAGGTTGCTTGA 477 0.4843 MDFRTIGLESPLFHTLRHMMDVSDDAAGDKTHNAPTRSYVQDAKAMAATPADVKECPNSYVFEIDMPGVKSGDIKVQVEDDNVLLISGERKREEEKEGSKYLRMERRVGKFMRKFVLPANANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIEVKVA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0450 158 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 42 158 IPR002068 -
Ssu5g0450 158 Pfam Hsp20/alpha crystallin family 52 156 IPR002068 -
Ssu5g0450 158 Gene3D - 7 157 IPR008978 -
Ssu5g0450 158 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 157 - -
Ssu5g0450 158 SUPERFAMILY HSP20-like chaperones 31 150 IPR008978 -
Ssu5g0450 158 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0450 Ssu-Chr5 9360159 9360635 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0450 K13993 - gmx:100813195 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0450 5 9360159 9360635 Ssu5g0450 5 9360159 9360635 ECH