Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0442 ATGGGTGAGGCTCCAGAAGTGTTCTACATTAATGGGTTCACAAAGTTTGGCCATGAAACCCAACAAAACCATGGCAATGAATATGATCAGAACCATCATTCTTCTTGGTACGAGGAAATCATCGATGACGACCTCAAATGGTCTTTTAAACTCAACAGCGTGCTCCATAAAGCGATTAGCGAGTACCAGGACATAGCACTCTTGGATACAAAGCGTTTTGGAAAGGCCTTAGTGCTTGATGGAAAGATGCAGAGTGCTGAAACGGATGAATTCATTTATCACGAATGCTTGATTCATCCCCCTCTTTTATGTCATCCCAACCCCAAGACTGTGTTTATAATGGGTGGAGGTGAAGGTTCTGCGGCTAGGGAAGCCCTTAAGCACAGGTCAATGGACAGAGTGGTCATGTGCGATATAGACAAGGAGGTGGTGGATTTCTGCCGAAAATACTTGATTGCAAACAGGGAGGCATTTTCTCATAAGAAGCTCGACCTTGTCATCAATGATGCCAAGGCTGAATTGGAGCAGAGAAAGGAGAAGTTTGACATCATTGTTGGAGATTTAGCAGACCCACTTGAAGATGGGCCTTGCTATCAACTTTACACAAAATCCTTCTACGAGAAGACTCTGAAGCCCAAACTCAATGATAATGGCATTTTTGTGACCCAGGCTGGACCCGCAGGCATCTTCACACACAAGGAGGTCTTCACTTCTATATATAACACAATCAAACAGGTCTTCAAATATGTGATTGCATACACCACTCATGTACCATCATTTGCCGACACATGGGGATGGGTTATGGCTTCGGACCAACCACTATCGATTTGTGCTGAAGAAATGGACAGAAGAATCGAAGCAAGAATAGATGGGGAACTTCTGTATCTAAACGGTGCTTGGTTCCATTCATCTACGACCATGAATAAAAGTGTTTACCAATCGCTGCAGAATGAAACTCACGTGTACACGGAAGAAAATGCTAGATTTATTCCTGGACATGGCATGGCTTTTCATCTCTAA 1020 0.4353 MGEAPEVFYINGFTKFGHETQQNHGNEYDQNHHSSWYEEIIDDDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALVLDGKMQSAETDEFIYHECLIHPPLLCHPNPKTVFIMGGGEGSAAREALKHRSMDRVVMCDIDKEVVDFCRKYLIANREAFSHKKLDLVINDAKAELEQRKEKFDIIVGDLADPLEDGPCYQLYTKSFYEKTLKPKLNDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFKYVIAYTTHVPSFADTWGWVMASDQPLSICAEEMDRRIEARIDGELLYLNGAWFHSSTTMNKSVYQSLQNETHVYTEENARFIPGHGMAFHL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0442 339 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 1 337 - -
Ssu5g0442 339 Coils Coil 160 180 - -
Ssu5g0442 339 PANTHER BNAA02G04280D PROTEIN 1 337 - -
Ssu5g0442 339 Gene3D Spermidine synthase, tetramerisation domain 34 86 IPR037163 -
Ssu5g0442 339 Hamap Polyamine aminopropyltransferase [speE]. 35 316 IPR001045 GO:0003824
Ssu5g0442 339 Gene3D Vaccinia Virus protein VP39 87 338 IPR029063 -
Ssu5g0442 339 Pfam Spermidine synthase tetramerisation domain 36 87 IPR035246 -
Ssu5g0442 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 35 316 IPR029063 -
Ssu5g0442 339 CDD AdoMet_MTases 115 223 - -
Ssu5g0442 339 Pfam Spermine/spermidine synthase domain 90 268 - -
Ssu5g0442 339 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 34 271 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0442 Ssu-Chr5 9212099 9215980 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0442 K18787 - gmx:100784972 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0442 5 9212099 9215980 Ssu5g0442 5 9212099 9215980 ECH