Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0438 ATGATAGCGTACCTAGAACACTTCGTGCACGGAAATGACACAGACTCGCTGCCAAACGACGACGTCGCGGCCCTCGAGGGCGCGTTCCACTTCGGCGGCGGCAGCAAGGACTTCGGCGGCATGAAGTCAGCGAAGCCGTTGGCCGTCATAAAGCCGGCCGTCGCCGGCGACGTGGCGAGGGCGGTGAAAGCCGCTGCTCGCACGGCGAACCTCACGGTTGCGGCTCGCGGCAACGGCCACTCCATCAACGGCCAGGCGATGGCGGAGAACGGCCTCGTCCTCGACATGCGCGCCATGGAGGACCACGTCACCCTCCTCTCCCTCGACGGCTCCTTACACGTCGACGTTTCGGGAGGAGCACTATGGGAAGAGGTCCTCCAACGCTGCGTTTCGAAGTTCCGCCTCGCGCCGCGGTCGTGGACCGATTACCTCCGTTTAACGGTCGGCGGAACGCTCTCTAACGCCGGCGTCAGCGGCCAGGCCTTCCGTTATGGCCCGCAGACGTCCAATGTAACGGAATTGGAAGTCGTCACCGGCAAAGGCGAAACCTTAGTCTGCTCTGAAACCCAAAATTCGGAACTCTTCTTTGCGGCCCTCGGCGGGCTGGGCCAGTTCGGTATTATAACCAGAGCTCGGGTCGCGGTTCAACAAGCTCCGGACATGGTGAGATGGATAAGGGTGGTGTACTCAGAATTTGAGGACTTCACTAGAGACGCAGAGTGGCTTGTAGCTCTCCAAGAGGGTGACGGTTTTGACTACGTGGAAGGGTTCGTTTTGGTGAACAGTGACGACCCTTGCAACGGGTGGCTCACTGTGCCCATGGGCCCGAACCAACGGTTCGACCCGGTTCGTGTGCCCTCGACCGCGGGCCCGGTTCTCTACTGCTTAGAACTCGCGCTTCATTATCGTAACGAAGACCACCCTTCCGCTGTTAATATGgaagTGGATAGATTACTTGGACGGCTACGATTCGTTGAGGGTCTAAAATTCTGCGTGGATGTGACATACATGGAATTCTTGCTTCGTGTAAAGCGTGTGGAGGAAGATGCACGAGCCAACGGCATCTGGGACGCACCCCACCCATGGCTGAACCTGTTCGTCTCCAAGTCCAACATCGCTGAATTTGATCGTGAAGTGTTCAAGAAAATCCTCAAGCACGGGGTTGGTGGCCCCATCCTAGTGTACCCTCTATTGCGAAGCAAGTGGGATAGTCGACACTCAGGTAGTGGTGCCGGACAGcaacattttttacattatagcCTTGCTCCGATTTATTCCACCACCCCCAAAGGGACCACCTACTGA 1305 0.5686 MIAYLEHFVHGNDTDSLPNDDVAALEGAFHFGGGSKDFGGMKSAKPLAVIKPAVAGDVARAVKAAARTANLTVAARGNGHSINGQAMAENGLVLDMRAMEDHVTLLSLDGSLHVDVSGGALWEEVLQRCVSKFRLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQTSNVTELEVVTGKGETLVCSETQNSELFFAALGGLGQFGIITRARVAVQQAPDMVRWIRVVYSEFEDFTRDAEWLVALQEGDGFDYVEGFVLVNSDDPCNGWLTVPMGPNQRFDPVRVPSTAGPVLYCLELALHYRNEDHPSAVNMEVDRLLGRLRFVEGLKFCVDVTYMEFLLRVKRVEEDARANGIWDAPHPWLNLFVSKSNIAEFDREVFKKILKHGVGGPILVYPLLRSKWDSRHSGSGAGQQHFLHYSLAPIYSTTPKGTTY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0438 434 Gene3D - 35 95 IPR016167 -
Ssu5g0438 434 Pfam FAD binding domain 46 187 IPR006094 GO:0050660
Ssu5g0438 434 PANTHER GULONOLACTONE OXIDASE 33 407 - -
Ssu5g0438 434 Gene3D - 222 411 IPR016170 -
Ssu5g0438 434 ProSiteProfiles PCMH-type FAD-binding domain profile. 42 218 IPR016166 GO:0071949
Ssu5g0438 434 Gene3D - 96 220 IPR016169 -
Ssu5g0438 434 PANTHER CYTOKININ DEHYDROGENASE 7 33 407 - -
Ssu5g0438 434 SUPERFAMILY FAD-binding/transporter-associated domain-like 35 215 IPR036318 GO:0050660
Ssu5g0438 434 SUPERFAMILY FAD-linked oxidases, C-terminal domain 219 409 IPR016164 GO:0003824|GO:0050660
Ssu5g0438 434 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 219 408 IPR015345 GO:0009690|GO:0019139|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0438 Ssu-Chr5 9081603 9086780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0438 K00279 - gmx:100783374 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0438 5 9081603 9086780 Ssu5g0438 5 9081603 9086780 ECH