Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0437 ATGAAGCTTTGGTGCTGTCTATGCTTCACTGAAGAAGACGAAGAAGAGCGCTTAGGGCGGAACCTTCCGAAGCCTATGAAGGAGGAGGACATTTTCGGAAACGACGACGACGGAAACGACGAGCGcaacgacgacgacgacgataAATTCTGGACGACGGAAACGTTTCCGGCGCGCTCCCTTCGCTCCGACGGCGAGAGCAgctccgccgccgccgccgcgtGCTCGGAAACCGCCGCCGCCGCCGGCGAGAGCCGCGACTCGAGCCACAAACGCGCCAAGTTCTACGCCTATTTCGAGGAGCGTCACTTTTCAACGCTTGCATCATCGAATGCCGGGAAATGCGGTGCATCTAATGAATATGGTGATTATGAGTATATTAAAGGCTCTCCTCTTCGACCAAACGGTGAGACTTGTTACGATGCTTTTGCATTGATGGGTGCTGGTGAGGAGAGTAGCTTCGATTCTAGCATTGTGAGAGATGGTGAAGGAGATGATAGTGATGTCTCGAAAGTGGAAGATGTAGAGGTTGTTAGAATGGATCTCACCGATGACTTGTTGCATATGGTTTTCTCGTTTTTGGATCATCCCAATCTCTGCAAAGCTGCCAGGGTTTGTAAGCAGTGGCGAGCTGCTAGTGCTCATGAAGATTTCTGGAagagtttgaattttgaagatcgGAACATATCTGAAGAACAATTTGAGGACATGTGTAGGCGTTATCCTAATGCCACAGCAATGAGCATATCTGGTTCTAATCTTAACTTGCTTGTCATGAAGGCTATCTCTTCATTAAGGAATCTAGAGGTTCTAACATTAGGAAGAGGGCAGATTGTTGATACTTTTTTCCATGCTTTAGCCGATTGttctatgttaaaaaaattaaatatcaatgatTCTACACTTGGCAATGGCATTCAGGAGATAACTATTAATCATGACAGATTGTGTCATCTTCAACTAACAAAATGCCGTGTGATGCGAATAGCAGTCAGGTGCCCACAACTTGAAACTATGTCATTGAAACGCAGTAACATGGCTCAGGTTGTACTTAATTGTCCTCTTTTGCATGAGCTTGATATAGGTTCTTGCCACAAACTTCCTGATGCTGCAATACGTGCTGCTGCAACTTCATGCCCTCAACTAGTCTCGCTGGACATGTCTAATTGTTCATGTGTCAGTGATGAAACTCTGCGTGAAATAGCATTGAGTTGTGCTAACCTTAGTTTTCTTGATGCATCATACTGCCCAAACATATCTTTGGAGTCTGTTAGACTGCCAATGTTGACAGTTCTAAAGCTTCATAGTTGTGAGGGCATCACTTCTGCCTCAATGGCTGCAATAGCTCATAGTTATATGTTGGAGGTTTTGGAGCTTGACAATTGCAGTCTGTTGACTTCAGTGTCTTTGGATCTTCCGCATTTGCAGACTATTAGATTGGTACACTGTCGCAAATTTGCTGATTTAAACTTGAGGACTATGATACTTTCTTCTATACTGGTATCAAACTGCCCTGCACTCCATCGTATCAACATCACTTCAAATTCACTTCAAAAATTAGCATTGCAAAAGCAAGATAGTTTAACTACGTTAGCTCTGCAATGCCAATCTTTACAAGAAGTGGACCTCTCAGAGTGTGAATCTTTGACAAACTCTATATGTGGTGTTTTTAGTGATGGTGGAGGATGCCCTATGTTGAAATCACTAGTTCTTGATAATTGTGAGAGCTTGACATCAGTTCGGTTCATCAGCACCTCTTTAGTCAGTCTTTCCCTTGGTGGTTGTCGGGCAATTACTACTCTTGAGCTCACATGCCCTAACCTTGAGAAAGTCATTTTGGATGGTTGTGATCATTTGGAAAGAGCATCATTTTGCCCTGTTGGTCTTCGGTCTCTCAATTTAGGAATATGTCCAAAATTGAATATACTCAGCATAGAAGCCATGTTTATGGTCTCACTTGAGTTGAAAGGATGTGGTGTACTGTCTGAAGCATCTCTTAATTGTCCTCTCTTGACATCTCTGGATGCTTCCTTTTGCAGCCAACTCACTGATGAATGCTTGTCTGCAACAACGGCCTCATGCCCATTGATTGAGTCATTGATATTGATGTCATGCCCATCGATTGGTTTAGATGGACTTTGTTCTTTGCGTTGGCTCCCAAATTTGACCCTACTGGATTTGTCATACACTTTTTTGGTCAATTTGCAACCTGTTTTTGAGTCTTGTTCACAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACTGACTCATCACTTGAACCTCTTTACAAAGGGGGTGCTTTACCAGCACTTCAAGAGTTGGACTTGTCTTATGGAACACTGTGTCAGTCTGCCATAGAGGAGCTTCTTTCTTGCTGCACACACCTTACACGTGTGAGCTTGAATGGCTGTGTCAATATGCATGATTTAAACTGGGGATGCAGTCGTGGGCATATTGCTGAGTTGCCTGGTGTAAATGTTCTATCCATTGGAAGTTCCCATGAAAATGTCCATGAGTTAAGTGAGCAACCCACCCGATTACTGCAGAACCTAAACTGTGTGGGATGTCCAAACATTCGGAAAGTTTTCATTCCATTAGCGGCACATTGTTCCCATTTGTTGTATCTAAACCTTTCTTTATCAGCTAATTTGAAGGAGGTTGATGTAACTTGTCTCAACCTATGCTGGCTTAATCTAAGCAATTGTTTATCTGTGGAAGTTTTGAAGCTAGAGAGTCCGAGATTGACCAGTCTATTCCTTCAGTCTTGCAACATTGATGAGGAAGCTGTTGAAGCTGCTGTATCAAAATGTACTATGCTGGAGACTCTTGATGTTCGCTTTTGTCCAAAGATAAGCTCAACGAGCATGGGAAGATTACGTGCAGCATGTTCTAGTTTGAAGCGTATATTCAGCAGCTTGTCAAATTCATAA 2937 0.4185 MKLWCCLCFTEEDEEERLGRNLPKPMKEEDIFGNDDDGNDERNDDDDDKFWTTETFPARSLRSDGESSSAAAAACSETAAAAGESRDSSHKRAKFYAYFEERHFSTLASSNAGKCGASNEYGDYEYIKGSPLRPNGETCYDAFALMGAGEESSFDSSIVRDGEGDDSDVSKVEDVEVVRMDLTDDLLHMVFSFLDHPNLCKAARVCKQWRAASAHEDFWKSLNFEDRNISEEQFEDMCRRYPNATAMSISGSNLNLLVMKAISSLRNLEVLTLGRGQIVDTFFHALADCSMLKKLNINDSTLGNGIQEITINHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIALSCANLSFLDASYCPNISLESVRLPMLTVLKLHSCEGITSASMAAIAHSYMLEVLELDNCSLLTSVSLDLPHLQTIRLVHCRKFADLNLRTMILSSILVSNCPALHRINITSNSLQKLALQKQDSLTTLALQCQSLQEVDLSECESLTNSICGVFSDGGGCPMLKSLVLDNCESLTSVRFISTSLVSLSLGGCRAITTLELTCPNLEKVILDGCDHLERASFCPVGLRSLNLGICPKLNILSIEAMFMVSLELKGCGVLSEASLNCPLLTSLDASFCSQLTDECLSATTASCPLIESLILMSCPSIGLDGLCSLRWLPNLTLLDLSYTFLVNLQPVFESCSQLKVLKLQACKYLTDSSLEPLYKGGALPALQELDLSYGTLCQSAIEELLSCCTHLTRVSLNGCVNMHDLNWGCSRGHIAELPGVNVLSIGSSHENVHELSEQPTRLLQNLNCVGCPNIRKVFIPLAAHCSHLLYLNLSLSANLKEVDVTCLNLCWLNLSNCLSVEVLKLESPRLTSLFLQSCNIDEEAVEAAVSKCTMLETLDVRFCPKISSTSMGRLRAACSSLKRIFSSLSNS 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0437 978 MobiDBLite consensus disorder prediction 13 32 - -
Ssu5g0437 978 SUPERFAMILY RNI-like 203 469 - -
Ssu5g0437 978 Pfam F-box-like 184 224 IPR001810 GO:0005515
Ssu5g0437 978 SMART LRR_CC_2 353 378 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 535 560 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 605 630 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 289 312 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 795 835 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 939 964 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 472 497 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 914 938 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 563 593 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 694 719 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 426 451 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 742 767 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 668 693 IPR006553 -
Ssu5g0437 978 SMART LRR_CC_2 379 404 IPR006553 -
Ssu5g0437 978 Gene3D Ribonuclease Inhibitor 500 627 IPR032675 -
Ssu5g0437 978 SUPERFAMILY L domain-like 661 972 - -
Ssu5g0437 978 SUPERFAMILY F-box domain 181 212 IPR036047 GO:0005515
Ssu5g0437 978 Gene3D Ribonuclease Inhibitor 733 891 IPR032675 -
Ssu5g0437 978 Gene3D Ribonuclease Inhibitor 175 423 IPR032675 -
Ssu5g0437 978 SUPERFAMILY RNI-like 461 760 - -
Ssu5g0437 978 PANTHER OS10G0396666 PROTEIN 85 939 IPR044703 GO:0010252|GO:1905393
Ssu5g0437 978 MobiDBLite consensus disorder prediction 13 65 - -
Ssu5g0437 978 SMART fbox_2 182 222 IPR001810 GO:0005515
Ssu5g0437 978 Gene3D Ribonuclease Inhibitor 644 732 IPR032675 -
Ssu5g0437 978 Gene3D Ribonuclease Inhibitor 424 499 IPR032675 -
Ssu5g0437 978 ProSiteProfiles F-box domain profile. 176 222 IPR001810 GO:0005515
Ssu5g0437 978 Gene3D Ribonuclease Inhibitor 904 977 IPR032675 -
Ssu5g0437 978 PANTHER OS10G0396666 PROTEIN 85 939 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0437 Ssu-Chr5 9003108 9009950 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0437 - - gmx:100782842 1694.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0437 5 9003108 9009950 Ssu5g0437 5 9003108 9009950 ECH