Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0427 ATGCTGTCTTTTGTAACAGAAAATATGGGCTTACTCTGTAGCAGAAACCGTCGTTATAATGATGCTGATGCTGAAGAAAATGCACAGACTGCAGAGATTGAAAGAAGAATAGAGTTAGAAACAAAGGCTGAAAAGCATATTCAGAAACTTCTACTACTTGGAGCTGGAGAGTCAGGAAAGTCCACAATATTTAAGCAGATAAAACTTTTGTTTCAAACTGGCTTTGACGAGGCAGAACTAAAAAGCTACTTACCAGTCATTCATGCTAATGTGTATCAGACAATAAAATTACTGCATGATGGATCAAAGGAGTTTGCCCAGAATGATGTTGATTCTTCAAAGTATGTTATATCCAATGAAAATAAGGAAATTGGGGAAAAGTTATCGGAAATTGGAGGCAGGCTGGATTACCCATATCTCACCAAGGAACTTGCGCAGGAAATTGAGAATCTGTGGAAGGATCCTGCTATTCAGGAGACATATGCCCGTGGTAGTGAGCTTCAAATTCCAGATTGTACTCATTATTTCATGGAAAATTTGCAAAGGCTGTCTGACACAAGTTATGTTCCAACAAAGGAGGATGTTTTGTATGCAAGAGTGCGTACCACTGGTGTTGTAGAGATCCAGTTCAGCCCTGTTGGGGAAAACAAGAAAAGTGGTGAAGTCTATAGACTCTTTGATGTAGGGGGCCAGAGAAATGAGAGGAGAAAATGGATCCATTTATTTGAAGGAGTGTCAGCTGTAATATTCTGTGCTGCAATTAGCGAGTATGATCAAACACTTTTTGAGGATGAAAACAGAAACAGAATGATGGAGACTAAGGAACTTTTCGAGTGGGTCCTGAAGCAACCATGTTTTGAGAAAACATCCTTCATGTTATTCTTAAACAAGTTTGACATATTTGAGAAGAAGATCCTGAAAGTTCCACTTAATGTATGTGAGTGGTTCAAAGATTACCAACCAGTTTCAACAGGGAAACAAGAGATTGAGCATGCATATGAGTTTGTGAAGAAAAAGTTTGAGGAATCATATTTCCAGAGCACTGCTCCTGATCGCGTAGATCGCGTCTTTAAGATCTACCGGACAACTGCCCTTGATCAGAAGGTTGTGAAGAAGACTTTCAAGCTTGTTGATGAGACTTTGAGGCGGAGAAATCTCCTTGAGGCTGGCTTGTTATGA 1179 0.3969 MLSFVTENMGLLCSRNRRYNDADAEENAQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDVDSSKYVISNENKEIGEKLSEIGGRLDYPYLTKELAQEIENLWKDPAIQETYARGSELQIPDCTHYFMENLQRLSDTSYVPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDENRNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKVPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEESYFQSTAPDRVDRVFKIYRTTALDQKVVKKTFKLVDETLRRRNLLEAGLL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0427 392 ProSiteProfiles G-alpha domain profile. 46 392 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 SUPERFAMILY Transducin (alpha subunit), insertion domain 75 200 IPR011025 GO:0007165
Ssu5g0427 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 389 IPR027417 -
Ssu5g0427 392 CDD G-alpha 48 386 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 PRINTS Alpha G protein (transducin) signature 49 64 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 PRINTS Alpha G protein (transducin) signature 188 210 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 PRINTS Alpha G protein (transducin) signature 223 240 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 PRINTS Alpha G protein (transducin) signature 245 273 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 PRINTS Alpha G protein (transducin) signature 291 300 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 SMART galpha_1 27 391 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 9 392 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 Gene3D - 49 380 IPR027417 -
Ssu5g0427 392 Pfam G-protein alpha subunit 30 380 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Ssu5g0427 392 Gene3D - 76 201 IPR011025 GO:0007165
Ssu5g0427 392 PRINTS Plant G protein alpha subunit signature 35 44 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Ssu5g0427 392 PRINTS Plant G protein alpha subunit signature 100 114 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Ssu5g0427 392 PRINTS Plant G protein alpha subunit signature 278 289 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Ssu5g0427 392 PRINTS Plant G protein alpha subunit signature 85 98 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Ssu5g0427 392 PRINTS Plant G protein alpha subunit signature 124 138 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Ssu5g0427 392 PRINTS Plant G protein alpha subunit signature 208 223 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Ssu5g0427 392 PRINTS Plant G protein alpha subunit signature 327 342 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Ssu5g0427 392 PRINTS Plant G protein alpha subunit signature 344 356 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Ssu5g0427 392 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 9 392 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0427 Ssu-Chr5 8823546 8832007 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0427 K19729 - gmx:547977 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0427 5 8823546 8832007 Ssu5g0427 5 8823546 8832007 ECH