Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0415 ATGGAGATTAATCATGCATCCCCACACAGCATATATTCTATCAAGTATAAGGTACCTGAGAAACAGCCCTACAGAACTTGGTACCACTTTCAACCCCCACAAAATTGGATGAATGATCCAAATGCACCGATGTACTTCAAAGGAGTATACCACTTTTTCTACCAACATAATCCTCATGCAGCAACCTTTGGCGAGAAAATGGTGTGGGCTCACTCCGTGTCCTATGATCTAATCAATTGGATTCATCTGAATCATGTTATTGAACCAAGTGAGCCCTACGACATCAACAGTTGCTGGTCAGGCTCAGCCACTATACTCCCAAGTGAAGAAGAACCTGTTATTTTGTATACGGGGATTGATAAGAATAAGCATCAAGTTCAGAACATAGCTATGCCAAAGAATCCATCAGACCCCTTCTTAAGGGAATGGGTGAAACACCCTCAGAACCCTGTCATGACTCCACCAAGTGGAGTTGAAGTGAATAGTTTCAGAGACCCTTCAACTGCTTGGCAGGGAAAGGATGGAAAATGGAGGGTAGTCATTGGTGCTCAAAATGGTGATGAAGGGAAGGCAATTGTTTACCAAAGTGAGGATTTTGTTAATTGGACACTGGAGTTGAATCCCTTTTTTGCAACAGATAATACAGGAGTTTGTGAATGTCCAGATTTTTTTCCAGTGTATATCAACAAGAGTACAAATGGGGTGGATACATCTGTCCAAAATCAAAGTGTTAGACATGTCTTGAAGATAAGCTATTTTCGCAGACATGAGGACTATTATTTTCTTGGTAAATATGTCTATGATGAGGGAAACTTTATTCCTGATGTTAAATTCACAGGAACTGGTTCGGACTTAAGGCTTGACTATGGTAAATTTTATGCTTCAAAGTCATTTTTTGACCATGCTAAGAATATGAGGATATTATGGGCGTGGGTGAACGAGTGTGACACCACACAAGATGACATTGAGAAAGGATGGGCTGGTCTACAGTGTATTCCAAGGCAAGTTTGGCTTGATGAAAGTGGGAAGCGGTTAATGCAGTGGCCAATTGAAGAGGTAGAAAAACTACGTGACAATCACATTAGCATAACGGGGGAGAATTTGGTTGGTGGATCAATTATTGAAGTCTCAGGTATCACTGCATCACAAGCCGATGTAGAAGTGTTGTTTGAACTACCTGAACTAGAGAATGCGGAGTGGCTAGATCAAAGTGAAGTTGATCCTCACTTACTCTGTAGTGAAGAATATGCATCAAGAAGTGGCATAATAGGGCCATTTGGTTTGTTAGCTTTAGCATCTGAGGACCAAACAGAACACACTGCAGTCTTCTTCAGAATATATAGAGCTCCTAATAGATATGTATGCCTCATGTGCAGTGACCAGAGCAGGTCTTCATTGCGGCAGGATCTTGATAAAACCACATATGGAACCATCTTTGACATTGATCCCAATCTCAAAACGATTTCACTTAGAAGCTTGATTGACCGCTCCATTATTGAGAGTTTTGGAGAGAAAGGGAGGATTTGTATTACCAGTAGAGTTTATCCCTCGTTGGCTATAGACAAAGATGCCCATCTTTATGTATTCAACAGTGGAAGCCAGAGTGTGGTGATCTCAAAACTAAATGCTTGGAGTATGAAGCAAGCAGAATTTGGCCAAGAAGAAAGCATAAATAAGCAGTAG 1683 0.41 MEINHASPHSIYSIKYKVPEKQPYRTWYHFQPPQNWMNDPNAPMYFKGVYHFFYQHNPHAATFGEKMVWAHSVSYDLINWIHLNHVIEPSEPYDINSCWSGSATILPSEEEPVILYTGIDKNKHQVQNIAMPKNPSDPFLREWVKHPQNPVMTPPSGVEVNSFRDPSTAWQGKDGKWRVVIGAQNGDEGKAIVYQSEDFVNWTLELNPFFATDNTGVCECPDFFPVYINKSTNGVDTSVQNQSVRHVLKISYFRRHEDYYFLGKYVYDEGNFIPDVKFTGTGSDLRLDYGKFYASKSFFDHAKNMRILWAWVNECDTTQDDIEKGWAGLQCIPRQVWLDESGKRLMQWPIEEVEKLRDNHISITGENLVGGSIIEVSGITASQADVEVLFELPELENAEWLDQSEVDPHLLCSEEYASRSGIIGPFGLLALASEDQTEHTAVFFRIYRAPNRYVCLMCSDQSRSSLRQDLDKTTYGTIFDIDPNLKTISLRSLIDRSIIESFGEKGRICITSRVYPSLAIDKDAHLYVFNSGSQSVVISKLNAWSMKQAEFGQEESINKQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0415 560 SUPERFAMILY Arabinanase/levansucrase/invertase 21 350 IPR023296 -
Ssu5g0415 560 CDD GH32_Fruct1-like 35 338 - -
Ssu5g0415 560 Pfam Glycosyl hydrolases family 32 C terminal 352 545 IPR013189 -
Ssu5g0415 560 SMART glyco_32 29 506 IPR001362 GO:0004553|GO:0005975
Ssu5g0415 560 Pfam Glycosyl hydrolases family 32 N-terminal domain 29 349 IPR013148 -
Ssu5g0415 560 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 18 555 - -
Ssu5g0415 560 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 18 555 - -
Ssu5g0415 560 ProSitePatterns Glycosyl hydrolases family 32 active site. 29 42 IPR018053 GO:0004553|GO:0005975
Ssu5g0415 560 Gene3D - 362 546 - -
Ssu5g0415 560 Gene3D Glycosyl hydrolase domain; family 43 34 361 IPR023296 -
Ssu5g0415 560 SUPERFAMILY Concanavalin A-like lectins/glucanases 349 548 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0415 Ssu-Chr5 8638594 8641106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0415 39 551 Glycoside Hydrolase AT1G55120 53.920 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0415 - K01193 gmx:100806220 1058.13