Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0414 ATGGAGATCAATGTATCCGCCCACAGCATCAATTCAATAAAGTACAGGGTACCTGAAAAACAGCCTTACCGAACTTGGTACCACTTTCAGCCCCCACAAAATTGGATGAACGATCCAAATGGACCAATGTATTACAAAGGAGTTTACCACTTTTTCTACCAGTATAACCCTTATGCGCCAACCTTTGGTAAGCATATGGTATGGGGTCATTCCATATCCTATGATCTCATCAATTGGATTCATCTAAATCATGCTCTTGAACCAAGTGAGCCCTATGACATTAATGGCTGCTATTCTGGCTCAGTCACAACCCTCCCTGGGGAAAAACCTGTTATTATGTACACAGGGAGTGATACtaataaacatcaaattcaGAATATGGCTATGCCAAAGAATCTATCAGACCCCTTTTTAAGGGAATGGGTGAAACAACCCCAAAACCCTGTCATGACTCAACCCAGTGGAGTTGAAGTGGATGGTTTCAGAGACCCAACAACTGCTTGGCAGGGAAGTGATGGCAAATGGAGAGTAATTATTGGTGCTAAAAATGGTGATGAAGGGAAGGCTCTTCTCTACCATAGTGAGGATTTTGTTAATTGGAAACTACATCCCAATCCTTTATATGCGTCAGACAATACTGGAATGTTTGAGTGTCCAGATTTCTTTCCAGTGTACATCAGTGGCACCAAGAATGGGGTGGATACATCAGTCCAAAACTCCAGTGTTAAGCATGTCTTCAAAATGAGTTATCAAAACAAACAACTAGAGTACTATTTTCTAGGTGAGTATCTTCCTGATCAGGAAAAGTATATTCCTGATGCTGATTTGGCAGGAACTAGTCTGGACTTAATCTTGGACCATGGAAGATTTTATGCTACCAAGTCATTTTTTGACTATGCCAAGAACAGAAGAATATTGTGGGGATGGTCACAAGAGTCTGACACCACACAAGATGATTTTGAAAAAGGATGGGCTGGTCTACAGGGTATTCCAAGGCAAATTTGGCTTGATAAAAGTGGCAAGTGGTTGATGCAGTGGCCAATTGAAGAGGTAGAAAAACTACGTGACAAACAAATTAGCATAGTGGCAGAGGAACTGGTTGGTGGATCAACTCTTGAAGTCTCAGGTATCACTGCATCACAAGCCGATGTAGAAGTGTTGTTTGAGTTACCAAAACTAGAGAATGCGGAGTGGCTAGATCAAAGTGAAGTTGATCCTCACTCGCTATGTAGTGAAGAATATGCATCTAGAAGTGGCATAATAGGGCCATTTGGTTTGTTAGCTTTAGCATCTGAGGACCAAACAGAACACACTGCAATCTTCTTCAGAATATATAGAGCTCCCAATAGATATGTATGCCTCATGTGCAGTGACCAGAGCAGGTCTTCATTGCGGCAGGACCTTGATAAAACCCCATATGCAACTATCTTCGACATAGACCCCAATCTCAAAACGATTTCACTTAGAAGCTTGATTGACCGCTCCATTATTGAGAGTTTTGGGGAGAAAGGGAGAATTTGTATTACCAGTAGAGTTTATCCCTCGTTAGCTATAGACAAAGATGCCCATCTTTATGTATTCAACAATGGGAGCCAGAGTGTGGTGATCTCAGAACTTAATGCTTGGAGCATGAAGCAAGCAGAATTTGGCGAAGAAGAAAGCATAAATAAGCTGTag 1677 0.4126 MEINVSAHSINSIKYRVPEKQPYRTWYHFQPPQNWMNDPNGPMYYKGVYHFFYQYNPYAPTFGKHMVWGHSISYDLINWIHLNHALEPSEPYDINGCYSGSVTTLPGEKPVIMYTGSDTNKHQIQNMAMPKNLSDPFLREWVKQPQNPVMTQPSGVEVDGFRDPTTAWQGSDGKWRVIIGAKNGDEGKALLYHSEDFVNWKLHPNPLYASDNTGMFECPDFFPVYISGTKNGVDTSVQNSSVKHVFKMSYQNKQLEYYFLGEYLPDQEKYIPDADLAGTSLDLILDHGRFYATKSFFDYAKNRRILWGWSQESDTTQDDFEKGWAGLQGIPRQIWLDKSGKWLMQWPIEEVEKLRDKQISIVAEELVGGSTLEVSGITASQADVEVLFELPKLENAEWLDQSEVDPHSLCSEEYASRSGIIGPFGLLALASEDQTEHTAIFFRIYRAPNRYVCLMCSDQSRSSLRQDLDKTPYATIFDIDPNLKTISLRSLIDRSIIESFGEKGRICITSRVYPSLAIDKDAHLYVFNNGSQSVVISELNAWSMKQAEFGEEESINKL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0414 558 Pfam Glycosyl hydrolases family 32 C terminal 350 543 IPR013189 -
Ssu5g0414 558 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 18 553 - -
Ssu5g0414 558 Gene3D Glycosyl hydrolase domain; family 43 33 360 IPR023296 -
Ssu5g0414 558 SMART glyco_32 28 504 IPR001362 GO:0004553|GO:0005975
Ssu5g0414 558 CDD GH32_Fruct1-like 34 336 - -
Ssu5g0414 558 SUPERFAMILY Concanavalin A-like lectins/glucanases 347 546 IPR013320 -
Ssu5g0414 558 ProSitePatterns Glycosyl hydrolases family 32 active site. 28 41 IPR018053 GO:0004553|GO:0005975
Ssu5g0414 558 Gene3D - 361 544 - -
Ssu5g0414 558 Pfam Glycosyl hydrolases family 32 N-terminal domain 28 347 IPR013148 -
Ssu5g0414 558 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 18 553 - -
Ssu5g0414 558 SUPERFAMILY Arabinanase/levansucrase/invertase 20 348 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0414 Ssu-Chr5 8631046 8633813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0414 38 549 Glycoside Hydrolase AT1G55120 53.551 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0414 K01193 - gmx:100806753 1044.26