Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0412 ATGGCGTTGAGGCTTTTGATATCGCAGgTTGCAAGACGTCAGGCCAAATTTGGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGTTTGGAGATCGCGCAGGGAATAGGCTTTTGGGTGCCCAAGAGAGATTTCAGTCTAGTTACCTTGGTAGTATAGCTCGCCGAGCACGTGATGCAGATGAAGCCGCTGAAGTTGCTTATCTCAAAGAACTTTACCATCAGAATGATCCTGAGGCCGTGATTAGAGTATTTGAAAGCCAGCCATCTCTGCATAATAGTCCTTCAGCTCTTTCTGAATACGTAAAAGCATTGGTGAAAGTTGATAGGCTTGATGAAAGTGAATTACTGAAGACGTTAAGGAGAGGCATGTCTAATTCAATGAGTGAGGAAGAAACTGTAGCTGGTCTTTCTGCTTTTAGAAATATGGGAAAATCGGCTAAAGACAATACTATTGGAACTGCTAGTAATCCAATTCATATGGTGGCTAGAGAAGGAGGGAATTTAAAAGATCAGCTGTGGCGTACACTTAGGTCCATTGCAGTGgtctttttcttgatttctgGTGTAGGAGCACTCATTGAAGATAAAGGAATTAGTAAAGGACTTGGTATAAATGAAGAAGTGCAACCCAGCATGGAGTCAAGTACAAAATTTAATGATGTAAAAGGTGTTGATGAGGCAAAGGCAGAGCTGGAAGAAATTGTTCACTACCTTCGAGATCCTAAGCGCTTTACTCGTCTTGGTGGTAAGCTTCCAAAAGGAGTTTTGCTTGTTGGTCCACCTGGCACTGGGAAAACAATGTTGGCAAGAGCTATTGCTGGAGAGGCTGGTGTTCCATTCTTCTCCTGCAGTGGAAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCACGAAGGGTGAGGGATCTTTTCTCTGCTGCAAGGAAGCGATCACCTTCCATAATATTCATTGATGAGATAGATGCTATTGGAGGAAGCCGAAATCCGAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTACTGGTTGAGCTAGATGGATTCAAGCAAAATGAGGGCGTAATTGTGATTGGCGCTACTAATTTTCCAGAATCATTGGATAAGGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGAAGTTCCCAATCCGGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGGTTCTGAAGGCTGATGATGTTGATCTACTGATCATTGCTCGAGGAACACCTGGGTTCTCTGGTGCTGACCTTGCAAACCTGATTAACATTGCTGCTATCAAGGCTGCAATGGATGGTGCTAAAGCTGTGAGCATGGCTGATTTAGAGCATGCGAAAGACAAGATCCTGATGGGAAGTGAACGCAAGTCAGCTGTCATATCTGATGAGTCACGGAAGTTGACTGCTTTCCATGAGGGTGGCCATGCCCTCGTGGCCATTCATACTGATGGGGCTCTTCCTGTTCACAAGGCAACTATAGTTCCGCGTGGGATGGCTCTTGGCATGGTTACTCAATTGCCTGACAAGGATGAGACCAGCATTTCCCGTAAACAGATGCTTGCCCGGCTTGATGTTTGCATGGGAGGCCGGGTTGCCGAAGAGCTAATTTTTGGAGAAAATGAAGTCACCTCTGGTGCATCCTCAGATCTCAAGCAAGCAACTTATCTGGCAAGGGAGATGGTTACCAAATATGGTATGGGCAATGAGGTTGGACTAGTCACTCATGATTACAATGATGATGGGAGGAGCATGAGCTCAGAGACTAGGCTTCTTATTGAGAAAGAGGTGAAGCAATTCCTGGAGAGGGCTTACAGCAATGCAAAGACTATTCTGACCACTCACAACAAGGAGCTTCATGCACTTGCAAATGCTCTTCTGGAGCATGAGACCCTCACAGGAAGTCAGATAAAGACATTGCTTGCCCATGTTAGATCTCAGATGCAGCAGCAGCATCAGCCACAAACAGTTGAAGCTCAGAGCAGTTCACAATCCAACACAGTGCCTCCATCATCCAGCCACCCGGCatctgctgctgctgctgctgctgcagCCGCTGCCACAGCCGCAGCTACAGCTACTGCTGCTGCTGCCAAGGCTAAAAGTGCTCCAGTGGGATCTTAG 2157 0.4455 MALRLLISQVARRQAKFGQIKSVFATSYFSVNKFGDRAGNRLLGAQERFQSSYLGSIARRARDADEAAEVAYLKELYHQNDPEAVIRVFESQPSLHNSPSALSEYVKALVKVDRLDESELLKTLRRGMSNSMSEEETVAGLSAFRNMGKSAKDNTIGTASNPIHMVAREGGNLKDQLWRTLRSIAVVFFLISGVGALIEDKGISKGLGINEEVQPSMESSTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMYVGVGARRVRDLFSAARKRSPSIIFIDEIDAIGGSRNPKDQMYMKMTLNQLLVELDGFKQNEGVIVIGATNFPESLDKALVRPGRFDRHVEVPNPDVKGRQQILESHMSKVLKADDVDLLIIARGTPGFSGADLANLINIAAIKAAMDGAKAVSMADLEHAKDKILMGSERKSAVISDESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLKQATYLAREMVTKYGMGNEVGLVTHDYNDDGRSMSSETRLLIEKEVKQFLERAYSNAKTILTTHNKELHALANALLEHETLTGSQIKTLLAHVRSQMQQQHQPQTVEAQSSSQSNTVPPSSSHPASAAAAAAAAAATAAATATAAAAKAKSAPVGS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0412 718 Pfam ATPase family associated with various cellular activities (AAA) 260 389 IPR003959 GO:0005524|GO:0016887
Ssu5g0412 718 Gene3D Peptidase M41 465 663 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu5g0412 718 SUPERFAMILY FtsH protease domain-like 471 655 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu5g0412 718 PANTHER METALLOPROTEASE M41 FTSH 9 689 - -
Ssu5g0412 718 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 212 652 IPR005936 GO:0004176|GO:0004222|GO:0016020
Ssu5g0412 718 MobiDBLite consensus disorder prediction 658 685 - -
Ssu5g0412 718 CDD AAA 257 389 - -
Ssu5g0412 718 Pfam Peptidase family M41 471 651 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu5g0412 718 MobiDBLite consensus disorder prediction 658 695 - -
Ssu5g0412 718 SMART AAA_5 256 392 IPR003593 -
Ssu5g0412 718 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 9 689 - -
Ssu5g0412 718 Pfam AAA+ lid domain 412 455 IPR041569 -
Ssu5g0412 718 Gene3D - 391 464 - -
Ssu5g0412 718 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Ssu5g0412 718 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 677 IPR005936 GO:0004176|GO:0004222|GO:0016020
Ssu5g0412 718 Gene3D - 208 390 IPR027417 -
Ssu5g0412 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 477 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0412 Ssu-Chr5 8581333 8595085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0412 61 652 Miscellaneous Gene Families AT5G53170 51.373 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0412 K08955 - gmx:100808349 1172.53