Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0410 ATGGAGCCCCCCACACCGTACGTTTCCTCCGAGGAGCTCCTGAAGCACAACACGCGTGACGACGCGTGGATCTCCATACACGGCGAGATCTACGACGTCTCCTCCTGGCTCGACCGCCACCCCGGCGGCTCCCTCCCCCTTCTCACCCTCGCCGGCCGCGACGCCACCGACGCCTTCCTCGCCTTCCACCCCCGCTCCGCCTCCCTCCGCCTCCCCTCCCTCTCCACCGGCCTCCGCCTCGCCGACCCCGCCGTCTCCGCCGCCTCCTCCGACTACCGCAAACTCTTCTCCGACCTCTCCGCCCTCGGCCTCTTCGACCGCAAGGGCCACACCACCCTCCTCCTCCTCTCCCTCATCCTCGCCTTCCTCTCCCTCAGCGTCGCCGCCGTCCTCCTCTCCCGCAGCGCCTGCCTGCGCGTCCTCTCCGGCGCCCTCGTCGGCTTCACCTGGATACAGTCCGGCTGGATAGGCCACGACTCCGGCCACTACGTCGTCATGTCCGACCGCCGCCTCAACCGCGTCGCCCAGCTTCTCTCCGGCAACGTCCTCGCCGGAATCAGCATCGCCTGGTGGAAGTGGAACCACAACGCCCACCACATTGCCTGCAACAGCCTCGACTTCGACCCCGACCTTCAGCATTTACCCTTCTTCGTGGTTTCCTCCAGGCTTTTCAATTCCATCACCTCTCGCTTTTACGGCAGAAGGATGAGTTTCGATCGGTTTGCCAGGTTTCTGGTTAGTTACCAGCACTGGACGTTTTACCCTGTCATGTGTTTCGCTAGGATTAACCTGTTTGCGCAGTCTTTTCTCCTGCTGTTCTCTAGGAGGAAGGTGGAGAATAGGATAGTGGAGCTTCTGGGGCTGCTCGCGTTTTGGGTTTGGTACCCTTTGTTGGTCTCGTGCTTGCCCAGCTGGTGGGAGAGGGTTTTGTTTGTGGTGCTGAGTTTTTCTGTGACGGGGATTCAGCATGTGCAGTTCTGTTTGAACCATTTCTCTTCCAAGGTCTACCTTGGCCCGCCGAATGGCCGCGATTGGGTTGAGAAGCAGACTGGTGGGACCCTTGACGTCGGGTGCTCCGCTTGGATGGATTGGTTTCATGGCGGGTTGCAGTTTCAGGTGGAGCATCACTTGTTTCCCCGCCTGCCGCGGTGCCATCTCCGGAAGATCGCGCCGTTGGTGAGGGATCTTTGCAAGAAGCATAATCTTCCTTACAATTGTGTGTCGTTCTGGAAGGCCAATGTGCTGACGATTCAGACTTTAAGGAATGCAGCGCTGCAGGCGAGGGATGGTTCTAAGCCGGTTCCCAAGAATTTGGTTTGGGAGGCTGTTAATACTCATGGATGA 1344 0.5967 MEPPTPYVSSEELLKHNTRDDAWISIHGEIYDVSSWLDRHPGGSLPLLTLAGRDATDAFLAFHPRSASLRLPSLSTGLRLADPAVSAASSDYRKLFSDLSALGLFDRKGHTTLLLLSLILAFLSLSVAAVLLSRSACLRVLSGALVGFTWIQSGWIGHDSGHYVVMSDRRLNRVAQLLSGNVLAGISIAWWKWNHNAHHIACNSLDFDPDLQHLPFFVVSSRLFNSITSRFYGRRMSFDRFARFLVSYQHWTFYPVMCFARINLFAQSFLLLFSRRKVENRIVELLGLLAFWVWYPLLVSCLPSWWERVLFVVLSFSVTGIQHVQFCLNHFSSKVYLGPPNGRDWVEKQTGGTLDVGCSAWMDWFHGGLQFQVEHHLFPRLPRCHLRKIAPLVRDLCKKHNLPYNCVSFWKANVLTIQTLRNAALQARDGSKPVPKNLVWEAVNTHG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0410 447 Pfam Fatty acid desaturase 140 406 IPR005804 GO:0006629
Ssu5g0410 447 Gene3D - 2 77 IPR036400 -
Ssu5g0410 447 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 77 IPR001199 -
Ssu5g0410 447 PANTHER FATTY ACID DESATURASE 2 6 446 IPR012171 GO:0016491
Ssu5g0410 447 PIRSF FA_sphingolip_des 2 435 IPR012171 GO:0016491
Ssu5g0410 447 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 66 IPR001199 -
Ssu5g0410 447 CDD Delta6-FADS-like 140 402 - -
Ssu5g0410 447 SMART Cyt_b5_2 8 80 IPR001199 -
Ssu5g0410 447 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 69 IPR036400 -
Ssu5g0410 447 PANTHER DELTA(8)-FATTY-ACID DESATURASE 2 6 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0410 Ssu-Chr5 8549954 8551297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0410 7 447 Lipid Metabolism Gene Families AT2G46210 62.132 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0410 K21737 - gmx:100776476 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0410 5 8549954 8551297 Ssu5g0410 5 8549954 8551297 ECH