Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0406 ATGGAGAATGGAGACATCCCTGAGAATGCCAATGAGCATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAAGCTGATACTTGTGAAGGATGCCCAAATCAGCAAATTTGTGCCACTGCTCCCAAAGGACCTGACCCTGATCTGGTTGCCATTGCAGAAAGAATGGCAACTGTGAAACATAAGATATTGGTCTTATCTGGAAAAGGAGGAGTTGGCAAGAGCACATTTTCTGCCCAACTGGCATTTGCTTTAGCAGCAAGGGATTTTCAGGTGGGTCTTCTTGACGTTGATATTTGTGGTCCAAGCATTCCAAAGATGCTTGGCCTAGAAGGTCAAGAGATACACCAGAGCAACCTTGGATGGTCTCCTGTCTATGTGGAGTCCAACCTTGGGGTCATGTCAATTGGGTTCATGCTTCCCCATCCTGATGAAGCTGTTATATGGAGAGGCCCACGCAAAAATGGGCTTATCAAGCAGTTTTTAAAAGATGTCTACTGGGGTGAACTTGATTTTCTAATTGTTGATGCTCCACCAGGAACCTCAGATGAACACATTTCCATTGTTCAATGCCTTGATGCCACTGGAGTAGATGGTGCAATCATAGTTACTACTCCTCAACAAGTCTCTCTTATTGATGTGAGAAAAGAAGTGAATTTTTGCAAGAAAGTTGGAGTGAAAGTTCTTGGGGTTGTAGAGAATATGAGTGGCTTGTGCCTGTCCATCACAGATTTAAAGTTTATGAAGCTGACTGATAATGGTGAGCAGAAAGATGTTACAGAGTGGGTTTGGGGATACATGAGAGAAAAAGCGCCAGAAATGCTGAATTTGATTGCTTGCAGTGAAGTATTtgatagtagtggtggtggagcAGTGAAAATGTGCAATGAAATGGGGGTACCCTTTCTTGGTAAAGTTCCTTTGGATCCGCAGCTTTGTAAGGCAGCTGAAGAAGGTACATCCTGCTTTGCTAATAAAGATTGCGTTGTTAGCGCTCCGGCATTAAAGAAGATTATAGAGCAGTTGATTGAAACTAATGGGTGGTCAATGTTAGTAAGTAATGGAGCGTAG 1068 0.4251 MENGDIPENANEHCPGPQSESAGKADTCEGCPNQQICATAPKGPDPDLVAIAERMATVKHKILVLSGKGGVGKSTFSAQLAFALAARDFQVGLLDVDICGPSIPKMLGLEGQEIHQSNLGWSPVYVESNLGVMSIGFMLPHPDEAVIWRGPRKNGLIKQFLKDVYWGELDFLIVDAPPGTSDEHISIVQCLDATGVDGAIIVTTPQQVSLIDVRKEVNFCKKVGVKVLGVVENMSGLCLSITDLKFMKLTDNGEQKDVTEWVWGYMREKAPEMLNLIACSEVFDSSGGGAVKMCNEMGVPFLGKVPLDPQLCKAAEEGTSCFANKDCVVSAPALKKIIEQLIETNGWSMLVSNGA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0406 355 Gene3D - 54 348 IPR027417 -
Ssu5g0406 355 PANTHER CYTOSOLIC FE-S CLUSTER ASSEMBLY FACTOR NBP35 1 342 - -
Ssu5g0406 355 Hamap Cytosolic Fe-S cluster assembly factor NUBP1 [NUBP1]. 7 346 IPR028601 GO:0016226|GO:0051536|GO:0051539
Ssu5g0406 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 321 IPR027417 -
Ssu5g0406 355 MobiDBLite consensus disorder prediction 1 26 - -
Ssu5g0406 355 Hamap Iron-sulfur cluster carrier protein. 53 342 IPR019591 GO:0005524|GO:0016226|GO:0051536|GO:0140663
Ssu5g0406 355 ProSitePatterns Mrp family signature. 166 182 IPR000808 GO:0005524
Ssu5g0406 355 Pfam NUBPL iron-transfer P-loop NTPase 279 341 IPR033756 -
Ssu5g0406 355 Pfam NUBPL iron-transfer P-loop NTPase 58 242 IPR033756 -
Ssu5g0406 355 CDD Mrp_NBP35 60 313 - -
Ssu5g0406 355 PANTHER NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED 1 342 IPR019591 GO:0005524|GO:0016226|GO:0051536|GO:0140663
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0406 Ssu-Chr5 8503412 8506686 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0406 - - gmx:100820246 692.189