Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0400 ATGAGGGAAGAAAACCCATCAGAGAACAGGTCCAAAGCTTCAAAATTTGCCGATCAAAACCAAGCACCAAAGCCTCAAAACACCAAAGGAACCAACCCCAACAACAGAACGAGGTTGTGGGGTGCCCACATTGTGAAAGGCTTCGCCGCTGACAAAAAAAGCAAGCTTCAATCAACACTTCCCAACAAAAAACAaacatcatcaacaacaacaacaacaacaacctcgGATAATGTTGTTGCAAACCttaagaacaacaacaacaaccctTTTGTGCCATCTCACTCCCGAGTGAAGAGGTCCCTCATAGGTGACTTATCATGTTCAATCAACCCCACACAGGTTCACCCACACGCGTTCCCAACTCACAGAAGACAATCTTCCACCGATTTGTTCACGGAGTTGGATCACATGAGGGGGTTGCTGCAAGAGTCCAAGGAGAGGGAGTGCAAGCTGCATGCTGAGCTGGCAGAGTGTAGGAGGAAGGCGAGTGAGGTGGATGAGGCTGTGAAGAGGGTTGCATTGTTGGAACAAGAGAAGGCCACTCTCTCTGAACAATTGGCTGCATTGACATGTGAGGAAGTGAAAGGGGAAGAGCAACACAAGGAAGTGAAAGTGCAGAATCTTGAGCTGGAAGTTGTTGAGTTGAGGAGGCTCAATAAGGAGCTGCAGATGCAGAAGAGGAACCTCACTTGCAGGCTCTCTTCTCTTGAGGCTCAGCTGTCTTGTCCTAACAAAGCTTCTGAGAGTGACATTGTTGCCAAAATTAAAGCTGAGGCATCATTGCTGAGGCTCACGAATGAAGATCTGTGCAAACAAGTGGAAGGTTTACAGATAAGCAGGTTGAATGAGGTTGAGGAGCTTGCCTACTTGAGGTGGGTGAATTCATGTTTAAGAAATGAGTTGAAGAATACATGCTCAGCATTGGATTCTGATAAGCCATCTAGCCCTCACTCAGTTGTCAGCAGTAGTGGAGATTGTGTTAGTTCTTTCTCTGATCAAACCAATAGGTACTTAAATTGTGGCAGTGCAAATAGGTTCAATATGATGAAGAAGCCAAAAAAGTGGCCCATAACTAGTGACCATTTGTCACAAGTAGAGTGCCAAGGTAGTCTCATTGATAAAAATTGGATTGAATCAGATGTAGGGGGGAGCCCCAGAAGAAGACACTCTATCAGTGGATCAAACTATTCAGAGGAAGAGGTTGTTTTGAGTAAGAGAAGACAGTCTGATTGTTTTGTATGTtcaaaagaaatggaaaaggaatCAGTGCCGTTGTCTGTTCAACAATCTGGTTTGGAGATTGTTCAAAGACCACAATATTTTGGCAACTGCCAAGAGGCTACAAAGCTTTTGGCTTCTTCAGATGTCGAGAAGAGGGCCCTACGCATTCCTAATCCCCCTCCAAGGCCTTCATGTTCTATTTCtagcaaaacaaaacaagaaagtTCAGCTCAAGTCCCACCTCCCCCGCCTCCTCCTCCCCCACCTCCTCCTATGAATTTTGCATCAAGAAGTAACACGGCGACCGTGAAACGAGCACCTCAAGTGGTGGAATTGTACCATTCACTTATGAAGAGAGACTCTAGAAAGGATTCTTCAAATGGAGGACTATCTGATGCACTAGATGTTGCTGATGTTCGTAGCAGCATGATTGGAGAAATCGAAAACCGTTCATCACATTTGCTTGCTATAAAGGCGGATATTGAGACTCAGGGAGAATTTGTGAATTCATTGATTAGAGAGGTGAACAATGCAGTTTATCAGAACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTGGATGATGAACTCTGCTTCCTTGTGGATGAGAGGGCTGTCCTTAAGCATTTTGATTGGCCAGAGAAGAAAGCTGACACATTAAGAGAAGCAGCATTTGGGtatcaagatttgaaaaaattagaatcTGAAGTTTCCTCCTACAAGGATGATCCCAGGCTACCTTGTGATATTGCTCTAAAGAAAATGGTTGCATTGTCAGAAAAGATGGAGCGCACAGTTTATAGCCTTGTTCGCACAAGAGAGTCATTAATGCGTCAGTGCAAGGAGTTTCAAATTCCCATAGAATGGATGCTTGATAATGGAATTATTGGCAAGATAAAGCTAAGCTCAGTTAAATTGGCTAAAAAGTATATGAAAAAGGTAGCAATGGAACTTCAAGCAAAGTCAGCACTAGAAAAAGATCCCGCAATGGATTACATGCTTCTCCAAGGAGTGAGATTTGCTTTTAGAATCCATCAGTTTGCAGGAGGATTTGATGCAGAAACAATGCATGCTTTTGAGGAACTTCGCAATCTAGCTTCTCTTCTTAACAAAACATGA 2343 0.4174 MREENPSENRSKASKFADQNQAPKPQNTKGTNPNNRTRLWGAHIVKGFAADKKSKLQSTLPNKKQTSSTTTTTTTSDNVVANLKNNNNNPFVPSHSRVKRSLIGDLSCSINPTQVHPHAFPTHRRQSSTDLFTELDHMRGLLQESKERECKLHAELAECRRKASEVDEAVKRVALLEQEKATLSEQLAALTCEEVKGEEQHKEVKVQNLELEVVELRRLNKELQMQKRNLTCRLSSLEAQLSCPNKASESDIVAKIKAEASLLRLTNEDLCKQVEGLQISRLNEVEELAYLRWVNSCLRNELKNTCSALDSDKPSSPHSVVSSSGDCVSSFSDQTNRYLNCGSANRFNMMKKPKKWPITSDHLSQVECQGSLIDKNWIESDVGGSPRRRHSISGSNYSEEEVVLSKRRQSDCFVCSKEMEKESVPLSVQQSGLEIVQRPQYFGNCQEATKLLASSDVEKRALRIPNPPPRPSCSISSKTKQESSAQVPPPPPPPPPPPPMNFASRSNTATVKRAPQVVELYHSLMKRDSRKDSSNGGLSDALDVADVRSSMIGEIENRSSHLLAIKADIETQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYQDLKKLESEVSSYKDDPRLPCDIALKKMVALSEKMERTVYSLVRTRESLMRQCKEFQIPIEWMLDNGIIGKIKLSSVKLAKKYMKKVAMELQAKSALEKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNLASLLNKT 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0400 780 MobiDBLite consensus disorder prediction 459 505 - -
Ssu5g0400 780 MobiDBLite consensus disorder prediction 55 94 - -
Ssu5g0400 780 MobiDBLite consensus disorder prediction 52 94 - -
Ssu5g0400 780 PANTHER PROTEIN CHUP1, CHLOROPLASTIC-LIKE 1 780 - -
Ssu5g0400 780 Coils Coil 159 240 - -
Ssu5g0400 780 MobiDBLite consensus disorder prediction 1 37 - -
Ssu5g0400 780 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 780 IPR040265 -
Ssu5g0400 780 SUPERFAMILY Formin homology 2 domain (FH2 domain) 489 499 - -
Ssu5g0400 780 MobiDBLite consensus disorder prediction 485 502 - -
Ssu5g0400 780 MobiDBLite consensus disorder prediction 12 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0400 Ssu-Chr5 8416098 8420766 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0400 - - gmx:100818641 1323.15