Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0398 ATGGCAGCAATAGTGATACCCATACGCATGTCACCAACGCCCTCATTCCCATCCTCTGGTCCGTCGAGACACACGCTTTCCCCCACCCCGTTTCGCGTTCCCACCAGAACCGGCACTTCCTTCTCTCTCAGCTCGAGGAACAACGGCCCCGAAACAGAGTGCCCCGTTCCGCACGAGCAGCAGCCCATAAACGAGTACCACTCGCTCTCCACGTTGTTCCCCTTCTCGTGGGCCGCCGGCGACGTCGTCGAGTACGGCTCGCGGCTGTTCGCCACCGGCGCCACCTTCGCGCTGCTGCTGGGCCTCCCCGTGGCGTGGTTCGGGTCCGCCGGGGCCCAGGCGGAGCCCGTGAAGCGGGCTCTGTGCGCGGCGTCGAGTGGGCTCTTCGCGGTGACGCTCGCTGTGCTTAGGATGTATCTGGGCTGGGCTTATGTCGGCAACCGCTTGCTCAGTGCCACCGTTGAATATGAGGAGACAGGGTGGTATGATGGTCAGATATGGGTGAAGACTGCTGAAGTTTTGGCCCGTGATAGACTCCTGGGATCATTTTCCGTCAAGCCTGTACTGAGCAGATTGAAAATTACGCTAGTGAGTCTGGCAACTTCGTTATTTGTATGTGCTCTTATCCTCATTAACATTGATGGGGACCAAAATCTGACATCAAACGAACCTGGAGTTCGAGTTGTACCTGGAGTTTACAATGATGATTCTGCTAGATTATTTGAACCAGATGCCTTTTGTGGTGAACCTGATCTTCAATAG 762 0.5617 MAAIVIPIRMSPTPSFPSSGPSRHTLSPTPFRVPTRTGTSFSLSSRNNGPETECPVPHEQQPINEYHSLSTLFPFSWAAGDVVEYGSRLFATGATFALLLGLPVAWFGSAGAQAEPVKRALCAASSGLFAVTLAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKITLVSLATSLFVCALILINIDGDQNLTSNEPGVRVVPGVYNDDSARLFEPDAFCGEPDLQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0398 253 Pfam Conserved in the green lineage and diatoms 27 54 197 IPR009631 -
Ssu5g0398 253 MobiDBLite consensus disorder prediction 36 51 - -
Ssu5g0398 253 PANTHER OS05G0539900 PROTEIN 39 252 - -
Ssu5g0398 253 PANTHER - 39 252 IPR009631 -
Ssu5g0398 253 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0398 Ssu-Chr5 8387214 8390927 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0398 - - gmx:100818101 370.163