Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0395 atgAGTTCCGTTTCTAGGCCAGCTGCGAAGCAAGACACAGCAACACACACCATGGCCACGGATTCctatGCTTTGTCAGAGTGCTGGACAATAGGGGAGCGGATCTGTGCAGCGTTGATGCCATTCATCGCAGTGGTTGAGGTTTTGATGTTGGCTGTGACAGGGTGTTTCAGCTATTGCCCATGCAGCATTATTCAGAACCATAAACGTACCTATACTGCTAAGGATTTCGCAAGCCTCGCTGATGAAACCAGATTTACAGTTAATGAAGTGGAGGCATTACATGTGCTGTTTAAAAGGTTAAGTAGCTCCCTAATTGATGATGGCTTGATTCAGAAGGAGGAGCTACAATTGGCACTGTTTCAAACCCCAAATGGAAAAAATCTTTTCCTGGATCGAGTTTTTGATGTTTTCGACGAAAAAAGAAATGGTGTAATCGAGTTTGACGATTTTGTCCATGCGCTCGGTGTTTTCCATCCATATGCTCCCATAGATGAAAAAATTGACTTTGCATTTAAGCTCTATGACCTGAGGCGAACTGGGTTTATCGAGCCAGAGGAAGTCAAGCAAATGGTTGTAGCCATTTTAATGGAATTTGACATGAATCTTCCTGATAATCTTCTTGAAGCAATTGTTGACAAGACAATTGCTGACGTGGATAAGGACAATGATGGTAAAATCAGTAAAAAAGATTGGAAAGCTTTTGTGGGTCGAAATCCATCCCTCTTGATAAACATGACACTTCCTCATTTGAAGGATATCACTAGTGTGTTTCcaagttttattttcaaaacggAGGCAAAACTTTGA 810 0.4062 MSSVSRPAAKQDTATHTMATDSYALSECWTIGERICAALMPFIAVVEVLMLAVTGCFSYCPCSIIQNHKRTYTAKDFASLADETRFTVNEVEALHVLFKRLSSSLIDDGLIQKEELQLALFQTPNGKNLFLDRVFDVFDEKRNGVIEFDDFVHALGVFHPYAPIDEKIDFAFKLYDLRRTGFIEPEEVKQMVVAILMEFDMNLPDNLLEAIVDKTIADVDKDNDGKISKKDWKAFVGRNPSLLINMTLPHLKDITSVFPSFIFKTEAKL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0395 269 Pfam EF-hand domain pair 166 231 IPR002048 GO:0005509
Ssu5g0395 269 SMART efh_1 130 158 IPR002048 GO:0005509
Ssu5g0395 269 SMART efh_1 211 239 IPR002048 GO:0005509
Ssu5g0395 269 SMART efh_1 167 195 IPR002048 GO:0005509
Ssu5g0395 269 CDD EFh 167 236 IPR002048 GO:0005509
Ssu5g0395 269 Gene3D - 76 268 - -
Ssu5g0395 269 ProSiteProfiles EF-hand calcium-binding domain profile. 207 242 IPR002048 GO:0005509
Ssu5g0395 269 ProSiteProfiles EF-hand calcium-binding domain profile. 163 198 IPR002048 GO:0005509
Ssu5g0395 269 SUPERFAMILY EF-hand 78 260 IPR011992 -
Ssu5g0395 269 ProSiteProfiles EF-hand calcium-binding domain profile. 126 161 IPR002048 GO:0005509
Ssu5g0395 269 ProSitePatterns EF-hand calcium-binding domain. 220 232 IPR018247 -
Ssu5g0395 269 PRINTS Recoverin family signature 134 155 - -
Ssu5g0395 269 PRINTS Recoverin family signature 181 199 - -
Ssu5g0395 269 PANTHER CALCINEURIN B 22 267 IPR045198 GO:0005509|GO:0019722|GO:0019900
Ssu5g0395 269 PANTHER CALCINEURIN B-LIKE PROTEIN 10 22 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0395 Ssu-Chr5 8351486 8357740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0395 84 268 EF-hand Containing Proteins AT5G24270 62.703 6.49e-80 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0395 K06268 - gmx:100810494 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0395 5 8351486 8357740 Ssu5g0395 5 8351486 8357740 ECH