Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0392 ATGATAGTTGAGGTCCCTCCTGTGGCATTACTTCCCAATTGTCTTGTGCAACCAAAACTTCTTTCCCCATTCAGGAAGCAGGTTGGAGGAACTATATTGGCTGCGAAACTGGCAAAGGAGAGAGGATGGGCCATTAATGTGGGAGGAGGTTTTCATCACTGCTCTGCAGAAAAAGGAGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTCACTTTTGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTTGCCTATGACAGCCGAGTCTATATCCTGGATATGTACAATCCTGGAATATATCCTTTGGATTATGAGGCGAGAAACTACATAAATCAGAAAGTTGAAGTAAAGAGTGGGACACGTACAGAAGAGTATTTGCAAAAATTAGATGAAGCACTTGAGGTTGCTGGGCGTAGGTTTAACCCTGAGTTGGTAATTTATAATGCTGGAACCGACGTCTTAGAAGGTGATCCATTAGGAAGGTTGAAGATCAGTCCTGATGGAATTGCCCTTAGAGATGAGAAAGTTTTCCTATTTGCTCGTGAGAAGAACATTCCTATCGTCATGCTTACTTCAGGTCTGCTATTGTTTTCCTCCCTATCATATGGTGGCTACTATGGCCTTTTGTGTGCACAGGAAACTTACTTAACAGTTGCCTATATTACAATCTTTAGTCATATATTggtcctttttttatttgtagattgtGCATTTCACTCttga 777 0.4003 MIVEVPPVALLPNCLVQPKLLSPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFTFVRLNISRVMIIDLDAHQGNGHEMDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTRTEEYLQKLDEALEVAGRRFNPELVIYNAGTDVLEGDPLGRLKISPDGIALRDEKVFLFAREKNIPIVMLTSGLLLFSSLSYGGYYGLLCAQETYLTVAYITIFSHILVLFLFVDCAFHS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0392 258 PRINTS Histone deacetylase superfamily signature 160 170 IPR000286 -
Ssu5g0392 258 PRINTS Histone deacetylase superfamily signature 49 72 IPR000286 -
Ssu5g0392 258 PRINTS Histone deacetylase superfamily signature 83 98 IPR000286 -
Ssu5g0392 258 PANTHER HISTONE DEACETYLASE 11 1 211 - -
Ssu5g0392 258 Gene3D Histone deacetylase domain 10 235 IPR037138 -
Ssu5g0392 258 PANTHER HISTONE DEACETYLASE 11 1 211 - -
Ssu5g0392 258 CDD HDAC_classIV 1 207 IPR044150 GO:0004407|GO:0016575
Ssu5g0392 258 Pfam Histone deacetylase domain 13 211 IPR023801 -
Ssu5g0392 258 SUPERFAMILY Arginase/deacetylase 8 211 IPR023696 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0392 K11418 - gmx:100781276 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0392 5 8302723 8306162 Ssu5g0392 5 8302723 8306162 ECH