Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0339 ATGGCTGACCTCCGCAGGCTCAGCTCCATCGATTGGAAACCTTCGCCGGTGGTGGCTTTAGCCACCAGCTTCGACGGCTTGCGCGTCGCCGCGGCTCGCCAAGATGGCTCGCTCGAAATCTGGCTCGTCTCTCCCGGCTCCGTCGGCTGGCACTGTCAGCTgactatacACGGAAACCCTAACGGAAGAGTAACGTCGCTTATTTGGTGCCCCGGCGGCTCCGACGGAAGTCGCTTGTTTTCGTCTAATGTAGACGGCTCCGTTACTAAGTGGGATCTTTTCCACTTGAAGCAGAAGACGGTGCTCGATTCAGATGGTGTGTCAATCTGGCAAATGGCGGTGACATTTCCTAAGAGTGACAAGATAAATGATAAAAGGAAGGATGAACGAATGGGGAATGGGTTCCATGATTTTGATGAACATGAGAGCAGTGAAAGTGATGAAGATTCTGATGCACCTGGTCCTCTCAAGCGTTCTGATAGTGAGCATCCACTCGTGGCAATTGGTCTTGACGATGGATCTGTGAGAATTTATGATATCTCTGACacagataaatttatttatgtaaaatccTTGCCCCGGGTCAAAGGACGAGTTTTAAGTGTGACTTGGAGTACAGATGCTAACTACATATATTCAGGAAGTAGTGACGGGTTGATACGATGCTGGAATGCTACATTGGGCAATGAAATCTATAGGATTACAGCTGGACTTGGAGGATTGGGCAGTGGACATGAACTTTGTATATGGTCATTACTGTCTTTAAGGTCTGGGACACTTGTTAGTGCAGACAGCAGTGGTAGCGTCCAGTTTTGGGACAGCCAACATGGAACTCTCTTGCAAGCACATTCTTTACACAAGGGAGATGTAAATGCTCTGGTAGCAGCCCCTAGTCATGATAGGGTGTTCTCTGCTGGTTCTGATGGCCAGgtTATTCTTTACAAGCTGTCTAGTAGTCAGTCAGCATCATCTGATGATATCAATTCTCCATCAACAATGAAGAGATGGATCTATGTTCATTATGTAAGGGCTCATACACATGACGTCAGGGCCCTGACTGTTGCTGTACCGATAAGTCATGAAGATATTAAGCCAGAAAAGAGGATTAAAAGAGCTCGACGTGAAGAAAAGCCCATTGATTTTAGTTACCATAAGTGGGCTCATTTGGGGGTTCCCATGCTTATCTCAGCAGGAGATGACACAAAACTTTTTGCATACCCAGTGAAAGAATTCACTAAGTTTTCTCCTCATGATATCTGTCCTGCACCTCAGAGAACATCCATTCAACTAGTGCTTAATTCTGTCTTTAATCAATCCAAAATGCTTTTGGTCCAATCTTCGCAATGGATAGATGTTTGTTTGCTGCAACTCAAAAATGTACGCACCCCTGGAGGCTTTGTAAAGACTGAACTACTTGCTCGAGTCAACTGTAAGGCATCTCGGAAGATAATTTGCAGCACCATTTCTAATTCAGGGGCGCTAGTTGCATACTCTGATCATAAAGAACCTCGTCTTTTTGAATTGGAAAGGTCTGGAGTTGGAAAAATCACATGGAGTATTACACGAAGGAACCTTCCACAGATACTACCATTTGCTCATTCTATGATTTTTACTCATGACTCCTCCTGCTTGATAGTAGCAGGTCACGATAAAAGGATATATGTTGTGGATGTTGGGACATCAGATTCATCGTCAGATTCATCAAAATTAGTGCATACTTTTACACCTGGTCGCGAATTGCAAGATGAAGAATTACCTCCAACTGAGCCACCCATAACAAGATTGTTTACTAGTTTTGATGGGCAGTGGTTGGCAGCTGTGAACTGCTTtggggatatatatatatttaacttggAGACACGAAGGTGTTGTTTCTAA 1878 0.4356 MADLRRLSSIDWKPSPVVALATSFDGLRVAAARQDGSLEIWLVSPGSVGWHCQLTIHGNPNGRVTSLIWCPGGSDGSRLFSSNVDGSVTKWDLFHLKQKTVLDSDGVSIWQMAVTFPKSDKINDKRKDERMGNGFHDFDEHESSESDEDSDAPGPLKRSDSEHPLVAIGLDDGSVRIYDISDTDKFIYVKSLPRVKGRVLSVTWSTDANYIYSGSSDGLIRCWNATLGNEIYRITAGLGGLGSGHELCIWSLLSLRSGTLVSADSSGSVQFWDSQHGTLLQAHSLHKGDVNALVAAPSHDRVFSAGSDGQVILYKLSSSQSASSDDINSPSTMKRWIYVHYVRAHTHDVRALTVAVPISHEDIKPEKRIKRARREEKPIDFSYHKWAHLGVPMLISAGDDTKLFAYPVKEFTKFSPHDICPAPQRTSIQLVLNSVFNQSKMLLVQSSQWIDVCLLQLKNVRTPGGFVKTELLARVNCKASRKIICSTISNSGALVAYSDHKEPRLFELERSGVGKITWSITRRNLPQILPFAHSMIFTHDSSCLIVAGHDKRIYVVDVGTSDSSSDSSKLVHTFTPGRELQDEELPPTEPPITRLFTSFDGQWLAAVNCFGDIYIFNLETRRCCF 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0339 625 Gene3D - 2 152 IPR015943 GO:0005515
Ssu5g0339 625 MobiDBLite consensus disorder prediction 123 141 - -
Ssu5g0339 625 Gene3D - 155 418 IPR015943 GO:0005515
Ssu5g0339 625 SMART WD40_4 522 557 IPR001680 GO:0005515
Ssu5g0339 625 SMART WD40_4 235 273 IPR001680 GO:0005515
Ssu5g0339 625 SMART WD40_4 276 315 IPR001680 GO:0005515
Ssu5g0339 625 SMART WD40_4 49 92 IPR001680 GO:0005515
Ssu5g0339 625 SMART WD40_4 185 224 IPR001680 GO:0005515
Ssu5g0339 625 SMART WD40_4 3 42 IPR001680 GO:0005515
Ssu5g0339 625 MobiDBLite consensus disorder prediction 123 161 - -
Ssu5g0339 625 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 224 - -
Ssu5g0339 625 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Ssu5g0339 625 SUPERFAMILY WD40 repeat-like 243 623 IPR036322 GO:0005515
Ssu5g0339 625 SUPERFAMILY WD40 repeat-like 7 320 IPR036322 GO:0005515
Ssu5g0339 625 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 1 622 IPR044622 GO:0010073|GO:0035266
Ssu5g0339 625 Pfam WD domain, G-beta repeat 199 224 IPR001680 GO:0005515
Ssu5g0339 625 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Ssu5g0339 625 Gene3D - 429 625 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0339 Ssu-Chr5 7074089 7079683 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0339 K14548 - gmx:100797494 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0339 5 7074089 7079683 Ssu5g0339 5 7074089 7079683 ECH