Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0321 ATGGGCACTCCCAGCATTGCCTTTGGAGCAGAAACCAGCTACTCTACAAGTGTTGGCAAGTTTACGAAATACAATGCTGGTCTGTGCTTGAAAATGCCAAGTTCCAATGCTTCAGTAATTTTAGGTGATAAGGGAGACTCCATGAAGGTGTCATATTTGCACCAGCTAGATAGATTGAATGGGGGACCTGTTGTGGGAGAGATTAGCAGAAGGTTCTCTACAAATGAGAACACATTGACAGTTGGATGTTCATATGTGGTTGATCCTCAGACAGTTGTGAAGGCAAAGCTGAACAACCATGGCAACCTTGGGGCCTTATTGCAGCATGAGGTTACACGTAAGTCATTCTTGACAATCTCAGGTGCCTTTGAAACAAAGGATTTGGACAAGAGTCCCAAGTTTGGTTTCTCACTCTTGCTCAAGCCTTAA 429 0.4406 MGTPSIAFGAETSYSTSVGKFTKYNAGLCLKMPSSNASVILGDKGDSMKVSYLHQLDRLNGGPVVGEISRRFSTNENTLTVGCSYVVDPQTVVKAKLNNHGNLGALLQHEVTRKSFLTISGAFETKDLDKSPKFGFSLLLKP 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0321 142 ProSitePatterns Eukaryotic mitochondrial porin signature. 85 107 IPR001925 GO:0005741|GO:0008308|GO:0098656
Ssu5g0321 142 Gene3D Porin 1 141 IPR023614 -
Ssu5g0321 142 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 142 IPR001925 GO:0005741|GO:0008308|GO:0098656
Ssu5g0321 142 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 142 - -
Ssu5g0321 142 Pfam Eukaryotic porin 3 135 IPR027246 GO:0005741|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0321 Ssu-Chr5 6783639 6784602 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0321 K15040 - gmx:100794992 268.855