Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0293 ATGAATCGCGCGCTGTCCGTCGATAACAGGGACACGAAAAGGGCAAAGCTGAAGGACGGGGAAGAAGAGGGCGAGGGTCTTGCTTTTGCGTCGGGAGGCACACGCGGCAGCGTGTACCTGGACGACAACGTTTTGTTCGAGGTGCTGAAGCACGTGGACGCGCGGTCGCTGGCGATGGCGGGGTGCGTGTGCAAGCAGTGGCACAAGACGGGGCGGGACGAGAGGCTCTGGGAACTGATCTGCACCAAGCAGTGGGCGAACACGGGGTGCGGTGAGCAACAGCTGAGATCTGTGGTCCTCGCGCTCGGAGGCTTTCGTCGCCTCCACGCGCTCTACCTCTGGCCTCTCTCCAAGCCCCACGCGCCTTCCTCCTCCTGGCCTGCCATCCCGCACGTGCTAAGGTCCAAACCCCGTTGGGGCAAAGACGAGGTtcacctctccctctccctcctcTCTATTCGATACTACGAGAAGATGAATTTCCATAACACGAAAAACAGATGA 504 0.5754 MNRALSVDNRDTKRAKLKDGEEEGEGLAFASGGTRGSVYLDDNVLFEVLKHVDARSLAMAGCVCKQWHKTGRDERLWELICTKQWANTGCGEQQLRSVVLALGGFRRLHALYLWPLSKPHAPSSSWPAIPHVLRSKPRWGKDEVHLSLSLLSIRYYEKMNFHNTKNR 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0293 167 Pfam F-box-like 42 83 IPR001810 GO:0005515
Ssu5g0293 167 Gene3D - 37 132 - -
Ssu5g0293 167 PANTHER F-BOX ONLY PROTEIN 48-RELATED 11 161 IPR045118 GO:0019005|GO:0031146
Ssu5g0293 167 SUPERFAMILY F-box domain 39 126 IPR036047 GO:0005515
Ssu5g0293 167 PANTHER F-BOX PROTEIN GID2-LIKE 11 161 - -
Ssu5g0293 167 SMART fbox_2 40 80 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0293 Ssu-Chr5 6247666 6248169 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0293 K14495 - gmx:100802513 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0293 5 6247666 6248169 Ssu5g0293 5 6247666 6248169 ECH