Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0226 atggAGAGAACAAAGTCATCCATTGAACAAATTCAGCCTCCAACTTATGGAAACTTAGTAACCATTCTTAGCATCGACGGGGGTGGTATTAGGGGCATCATCCCCGCTACCATTATTGATTTCCTTGAATCTCAGCTTCAGACCTTAGTTGCCATGAACGAAGTAACAAAGCAAATCATTAAGCAAAATTCGGATTTCTTTCCAATCAAGCCTCTCGAATATGGTCGGTTCCTAATAATTTCAATAGGCACCGGGACAGcgaaaaatgaggaaaaattcAATGCACAAATGGCAGCTAAATGGGGGTTATTGGATTGGCTAACCCATAGTGGTAGTAATCCCTTAATTGACGTTTTCACTCAATCTAGTGCAGATATGGTGGATTTCCATTTATCTGCGGTAACTCAAGCACTTCATTCAGAGGATAATTACCTTCGAATACAGGATGACACATTGACTGGAACGGATTCTTCTGTTGACATTGCTACAAAGGAGAACTTGGAGAAACTTTGCCATATTGGAGAAAATCTGTTAAAGAAACCAGTTTCTAGGGTCAATTTAGAGAATGGTCTCTTTGAGCAATTGAAAAATGGGGAAACCAATGAAGATGCTCTCAAAAGATTTCATtactaa 633 0.3791 MERTKSSIEQIQPPTYGNLVTILSIDGGGIRGIIPATIIDFLESQLQTLVAMNEVTKQIIKQNSDFFPIKPLEYGRFLIISIGTGTAKNEEKFNAQMAAKWGLLDWLTHSGSNPLIDVFTQSSADMVDFHLSAVTQALHSEDNYLRIQDDTLTGTDSSVDIATKENLEKLCHIGENLLKKPVSRVNLENGLFEQLKNGETNEDALKRFHY 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0226 210 PANTHER PATATIN 1 49 - -
Ssu5g0226 210 SUPERFAMILY FabD/lysophospholipase-like 49 190 IPR016035 -
Ssu5g0226 210 Gene3D Cytosolic phospholipase A2 catalytic domain 9 48 - -
Ssu5g0226 210 Gene3D Cytosolic phospholipase A2 catalytic domain 49 210 - -
Ssu5g0226 210 PANTHER PATATIN 48 208 - -
Ssu5g0226 210 PANTHER XYLOSE ISOMERASE 1 49 - -
Ssu5g0226 210 PANTHER XYLOSE ISOMERASE 48 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0226 Ssu-Chr5 4755332 4758169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0226 1 49 Miscellaneous Gene Families AT2G26560 71.429 2.02e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0226 - - gmx:100777122 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0226 5 4755332 4758169 Ssu5g0226 5 4755332 4758169 ECH