Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0201 ATGGGCAACCAAGGTTTGAATGGCAATTATGCGGTTCCGCAACGGATGCCACAGTTTGAGTGCAAAGGAGAAGCTCAAGTGCTGGTTGTTCTGGATGATGTGTGGTCTCTCTCCGTGCTGGAGCAGCTTGTGTGGAAAATTCCTGGCTGCAAATTTCTTGTGGTGTCCAGATTCAAATTCCCGACAGTTTTTAATGCCACTTATCAAGTGGAATTGCTGGGTGAAAAGGATGCCCTTTCTTTGTTTTGTCACCATGCTTTTGGACAGAAATCAATTCCTTTGGGTGCTAATGTGAATTTGGTCAAGCAGGTTGTGGCCGAGTGTGGAAGGCTTCCACTGGCTCTGAAGGTGATTGGAGCTTCTTTGCGAGACCAGAATGAAATGTTTTGGTTGAGTGTTAAAAACAGGTTATCTCAAGGTCAAAGCATTGGTGAATCCTATGAAATCAATCTGATTGATAGAATGGCAATCAGTACTAACTACCTGCCAGAAAAGATCAAGGAGTGCTTCTTGGACCTGTGTTCTTTTCCTGAGGATAGAAAGATTCCTCTTGAAGTTCTAATCAATATGTGGGTTGAAATCCATGACATTCGTGAAACCGAAGCATATGCTATTGTGGTTGAGCTTTCAAACAAGAACCTTCTCACCTTAGTCAAAGAGGCACGtgCCGGGGGTATGTATAGCAGTTCCTTTGAGATTTCTGTTACTCAGCATGATATACTGAGAGACCTTGCTCTTAATTTGAGCAACCGTGGGAGCATTCATGAACACCGAAGGTTAGTTATGGCAAAACGAGAAGATAATGGACTACTCCCTAAAGAGTGGTCGAGATACAAGGACGGGCCCTTCGAAGCTCAGATTGTTTCAATCAACACAGgtgaaatgaccaaaatggaCTGGTTTGAACTGGATTTTCCTAAGGCTGAAGTGTTGATTATCAATTTCACATCCAGTGATTACTTTTTACCTCCCTTCATCAATAAAATGCCAAATTTGAGggcattgataataataaactacAGTTCCACATATGCCCGCTTACATAATGTTTCAGTTTTTAGGAATTTGACCAACTTGAGGAGTCTCTGGCTTGAAAAGGTTTTCACCCCTCAGTTGTCAGGCACTGTCTTGCAAAACTTGGGCAAATTATTTATAGTCCTCTGCAAGATTAACAATGGTTTGGATGGGAAAGAGTTCCCTAACCTCTCTGAGCTCACTCTTGATCACTGTGATGATCTAACTCACTTGCCCTCAAGCATTTGTGAAATAAAGTCACTCCAAAACTTGAGTCTCACCAACTGCCACTATTTGACCCGACTGCCAGTTGAGTTTGGCAAACTAAGATCACTAGAGATCCTCCGTTTATATGCTTGTCCAGATCTAGAAACACTTCCTCCTAGCATGTGTGACATGAAGAGATTGAAGTACATTGATATTTCTCAATGTGTTAACCTGACATGCTTCCCTGAAGAGATTGGTAGATTAGTAAGCTTAGAGAAGATTGACATGAGGGAATGCCCCATGATTAGGTATTTACCAAAATCTGCAGTGTCATTGCAATCTCTGCAGCTTGTAATTTGTGATGAGGAGGTATGTGGGATGTGGGGAGATGTTGAGATGGCCAAGCCAAATGTCCATATTCAAGTATCAGAACAGTGCTTTGATCTGGACTGGCTTCAAGAGTGA 1686 0.414 MGNQGLNGNYAVPQRMPQFECKGEAQVLVVLDDVWSLSVLEQLVWKIPGCKFLVVSRFKFPTVFNATYQVELLGEKDALSLFCHHAFGQKSIPLGANVNLVKQVVAECGRLPLALKVIGASLRDQNEMFWLSVKNRLSQGQSIGESYEINLIDRMAISTNYLPEKIKECFLDLCSFPEDRKIPLEVLINMWVEIHDIRETEAYAIVVELSNKNLLTLVKEARAGGMYSSSFEISVTQHDILRDLALNLSNRGSIHEHRRLVMAKREDNGLLPKEWSRYKDGPFEAQIVSINTGEMTKMDWFELDFPKAEVLIINFTSSDYFLPPFINKMPNLRALIIINYSSTYARLHNVSVFRNLTNLRSLWLEKVFTPQLSGTVLQNLGKLFIVLCKINNGLDGKEFPNLSELTLDHCDDLTHLPSSICEIKSLQNLSLTNCHYLTRLPVEFGKLRSLEILRLYACPDLETLPPSMCDMKRLKYIDISQCVNLTCFPEEIGRLVSLEKIDMRECPMIRYLPKSAVSLQSLQLVICDEEVCGMWGDVEMAKPNVHIQVSEQCFDLDWLQE 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0201 561 PRINTS Disease resistance protein signature 21 35 - -
Ssu5g0201 561 PRINTS Disease resistance protein signature 108 122 - -
Ssu5g0201 561 PRINTS Disease resistance protein signature 469 485 - -
Ssu5g0201 561 Pfam NB-ARC domain 26 153 IPR002182 GO:0043531
Ssu5g0201 561 Gene3D - 153 244 IPR036388 -
Ssu5g0201 561 Gene3D Ribonuclease Inhibitor 285 536 IPR032675 -
Ssu5g0201 561 Gene3D - 73 151 IPR042197 -
Ssu5g0201 561 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 558 IPR044974 GO:0006952
Ssu5g0201 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 173 IPR027417 -
Ssu5g0201 561 PANTHER NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 1 558 - -
Ssu5g0201 561 SUPERFAMILY RNI-like 307 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0201 Ssu-Chr5 4270493 4272798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0201 351 528 Receptor kinase-like Gene Family AT4G08850 27.957 1.98e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0201 - - gmx:100816326 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0201 5 4270493 4272798 Ssu5g0201 5 4270493 4272798 ECH