Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0191 ATGGCGAAATCGAGCGCCGACGACGGCGAGCTCCGGCGAGCTTGCGAGGCCGCAATTGAGGATCCGAAGCAGAGGGTCGTGATGGCGCTCCGCGTCGCCAAGAGCCAGGGCATCTTAGGAAAATCTTCCAAGCTCGGTCGTCAAATGGCCAAGCCTAGGGTTCTCGCTCTCTCCATTGCTGGTGACGACGTGGTGTTTCCTGCTGCGAAATCGAAGGGTCAGAGGACAATGGCTTTTCTTCGAGTTTTGAAGTATTCTACGGGAGGAGTTCTTGAACTAGCAAAACTATACAAGCTAAAGCATCTCTCAAAAGTTGAAGTTGTAACAAATGATCCCAGTGGATGTACATTTACTTTGGGATTTGATAACCTTAGAAGCCAGAGTGTGGCTCCTCCTCAATGGACAATGCGCAATATTGATGACAGGAATCGCCTCCTTCTTTCCATCTTGAACATCTGCAAAGATGTTTTGGGTCGCCTTCCAAAGGTTGTTGGTATAGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACGCCCCCTGTTTCTGCTCAGAATAAAGTGCGAGATGGTGGTCCTGTTGCGTCTGCTGTGACTGAAACAGAATTGAAAGTCAATGTTGAAAAGGAACTTGTCTCGCAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGAACTTATGTCATGGGTATTGGTGAAGCAGAGGAATTTTCTGAAAGGTTGAAGAGGGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCTATTTTAGAAAGTGAACCTTTGATGGATGAGGTGTTGCAAGGTCTCGAAGCAGCAACCAGTTGTGTGGAAGATATGGATGAATGGTTGGGCATATTCAATGTAAAACTCCGGCACATGAGGGAGGATATTGCATCAATAGAAACCCGCAATAACAACTTGGAAATGCAATCAGTAAATAACAAATCTCTCATTGAGGAGCTTGATAAGCTTCTTGAGGGATTGCGTGTCCCTTCTGAGTATGCGGCAAGTTTGACAGGAGGTTCATTTGATGAAGCTCGAATGCTTCAAAATGTAGAAGCATGTGAATGGTTGACCAGTGCCTTGCGTGGTCTTGAAGTGCCTAATCTAGACCCTAGTTATGCAAACATGAGAGCTGTTAAAGAGAAGCGTGCagaacttgaaaaattaaaatctactTTTGTCAGGAGAGCATCTGAATTCTTGAGAAATTATTTTGCAAGTTTGGTGGACTTCATGATAAGtgataaaagttacttttctcagCGGGGACAGTTAAAGAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAGAGTCTCGACAAGAATTGCCTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTCCGCAGGGAGGCCCGTGAGTTTGCAAATGAACTTCGTGCTAGTACTAAAGCATCTAGAAATCCAACTGTTTGGCTTGAAGGTTCCGCAGGTTCTGGTCAGAATGTAAATGCTACTGATACTTCCACAGTCTCTGATGCTTATGCAAAGATGCTTACGATTTTCATCCCGCTTCTGGTGGATGAGAGTTCTTTTTTTGCACACTTCATGTGCTTTGAAGTTCCTACCCTTGTTCCTCCTGGAGGTGTTGTTAATGGCAACAAAACTggatatgatgatgatgatgatttggGAATTATGGACATTGATGAGAATGACAGCAAATCTGGTAAAAATTCTGTGGAGCTTGCAGCTTTGAATAAATCACTGAAGGATTTACTTGATGGAATTCAAGATGACTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTTTACGCTGTATATCAATGCACGGAATAACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCGATTTGCTTCGTGACCTAGAGTCTCGGATATCTATGCAGTTCAACCGTTTTGTCGATGAAGCTTGCCATcaaattgaaagaaatgaaCGCAATGTTCGCCAAATGGGTGTCCTATCCTACATTCCCAGATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAGGGTCAGTCTAGGGATTTGGTTGACCAAGCATACACAAAATTTGTTAGCATAATGTTTGCAACTTTAGAAAAAATTGCACAAACAGATCCAAAGTATgcagatatttttctttttgagaacTATGCCGCCTTTCAGAATAGTTTGTATGACCTTGCCAACATTGTGCCCACTTTGGCCAAGTTTTATCATCAGGCTAGTGAAGCCTATGAACAAGCTTGTACACGCCATATTAGCATGATTATCTACTATCAATTTGAACGCCTTTTCCAGTTTGCTCGAAGGATTGAGGACTTGATGTTCACTGTTGCACCTGAAGAGATTCCTTTTCAACTTGGGCTGTCAAAAATGGATCTTCGGAAGATGTTAAAATCCAGTTTATCTGGGGTTGACAAGTCCATTGCTGCGATGTATAAGAAACTGCAGAAGAATTTGACTTCAGAGGAACTGTTACCCTCCTTGTGGGACAAATGCAAGaAGGAGTTTCTTGATAAGTACGAAAGTTTTGCCCAACTTGTGGCCAAGATTTACCCTACCGAGACGATCCCATCTGTAGCAGAGATGAGAGACCTTTTAGCTTCCATGTAG 2682 0.4254 MAKSSADDGELRRACEAAIEDPKQRVVMALRVAKSQGILGKSSKLGRQMAKPRVLALSIAGDDVVFPAAKSKGQRTMAFLRVLKYSTGGVLELAKLYKLKHLSKVEVVTNDPSGCTFTLGFDNLRSQSVAPPQWTMRNIDDRNRLLLSILNICKDVLGRLPKVVGIDVVEMALWAKENTPPVSAQNKVRDGGPVASAVTETELKVNVEKELVSQAEEEDMEALLGTYVMGIGEAEEFSERLKRELQALEAANVHAILESEPLMDEVLQGLEAATSCVEDMDEWLGIFNVKLRHMREDIASIETRNNNLEMQSVNNKSLIEELDKLLEGLRVPSEYAASLTGGSFDEARMLQNVEACEWLTSALRGLEVPNLDPSYANMRAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSAGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKTGYDDDDDLGIMDIDENDSKSGKNSVELAALNKSLKDLLDGIQDDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRDLLRDLESRISMQFNRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSIMFATLEKIAQTDPKYADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPTETIPSVAEMRDLLASM 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0191 893 Coils Coil 198 218 - -
Ssu5g0191 893 Coils Coil 231 258 - -
Ssu5g0191 893 Coils Coil 291 311 - -
Ssu5g0191 893 Pfam Exocyst complex component Sec3 234 493 IPR019160 GO:0000145|GO:0006887
Ssu5g0191 893 Pfam Exocyst complex component Sec3 588 876 IPR019160 GO:0000145|GO:0006887
Ssu5g0191 893 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 51 154 IPR028258 -
Ssu5g0191 893 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 893 - -
Ssu5g0191 893 SMART Sec3_PIP2_bind_2 48 156 IPR028258 -
Ssu5g0191 893 PANTHER SEC3/SYNTAXIN-RELATED 1 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0191 Ssu-Chr5 4047629 4071328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0191 1 893 EF-hand Containing Proteins AT1G47550 85.762 0.0 1582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0191 K19983 - gmx:100779844 1682.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0191 5 4047629 4071328 Ssu5g0191 5 4047629 4071328 ECH