Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0186 ATGGCTATGGACACTCCACTACTAGATAACAATGGCCACTCTACTAATGTTGAGGAGGGGAGTCCACCGAACGTTGTCAAGAGATTCGGGTTTGAGTCGAAGAAGCTATGGAGAATAGCAGGCCCAGCTATCCTTGCCTCTATATTTCAGTACTCGCTTGCTGCGCTCACTCAAACATTTGCTGGCCTTGTTGGTGAGCTCGATCTGGCGGCAGTTTCCGTTGAAAATTCTGTTATTGGTGGCCTCGCCTTTGGAGTCATGTTGGGTATGGGGAGTGCCTTGGAGACTCTTTGTGGGCAAGCATATGGTGCGGGTCAGATCAGGATGTTAGGGGTGTACCTGCAAAGATCATGGGTCATCTTATTGACTACAGCcgttattttggtccctatttaTGTTTGGTCATCTCCCATCTTGAAGCTCTTTGGAGAGACTACTGAGATCTCAGATGCTGCTGgaaaatttgCTCTGTGTATGATACCGCAGTTGTTTGCATACGCTGTGCACTTTCCAATCCAAAAGTTCTTACAGGCACAGAGGAAAATCCTCGTGATGTTATGGATATCAGTAGTTGTTTTGGTGATACACACATTTTTTAGTTGGCTTCTTATGTTCAAGTTGGGATGGGGCCTAACTGGAGCAGCAATTATGCTTAACACGTCATGGTGGTTGATCGTCATTGGGCAATTGTTGTACATTTTCATCACTAAGTCAGACGGAGCTTGGAGTGGATTTACATGGCTAGCATTTGCAGACTTGTTTGGTTTTGTAAAGCTTTCTTTGGCTTCAGCTGTTATGTTATGCTTGGAGTTTTGGTATTTGATGATAATAGTGGTGATAACAGGGCGCTTGAAAAATCCTCTGATACCTGTTGATGCCATATCTATCTGTTTGAACATAACTGGTTGGGATGCCATGATTGCCATTGGGTTCAATGCTGCTATAAGTGTAAGAGTTTCAAATGAACTTGGAGCTGGTGATTTCAAGGCTGCCAGATTTGCAGTGTGGGTGGTTTCCATCACATCAGTATCCATAGGTGTTGTTGTCATGATCGTAGTGCTAGCAACGAGGGATTACTTTCCCTACTTGTTTACCACGAGCATTGCAGTTGCCAAGGAAACAACTAAGCTTGCTATTTTGCTCGCTATCACAGCACTTTTAAACAGTCTTCAACCGGTCCTATCTGGTGTTGCTGTTGGAGCTGGCTGGCAAGCTATAGTAGCATACATCAACGTTGGGTGCTACTATATTATTGGATTACCGGCAGGGATAATCTTGGGATTCACATTTGATTTTGGAGTAGAGGGTATTTGGTCAGGGATGCTTGGAGGCATAGCTTTGCAGACCACAATCCTTATAATCGTCACTTCATTAACCAACTGGGAAAAACAGGTTGAAGAAGCAAAAAGCCGCGTGAGAAATTGGGGGAGGATCAATTGCGTATGA 1446 0.4364 MAMDTPLLDNNGHSTNVEEGSPPNVVKRFGFESKKLWRIAGPAILASIFQYSLAALTQTFAGLVGELDLAAVSVENSVIGGLAFGVMLGMGSALETLCGQAYGAGQIRMLGVYLQRSWVILLTTAVILVPIYVWSSPILKLFGETTEISDAAGKFALCMIPQLFAYAVHFPIQKFLQAQRKILVMLWISVVVLVIHTFFSWLLMFKLGWGLTGAAIMLNTSWWLIVIGQLLYIFITKSDGAWSGFTWLAFADLFGFVKLSLASAVMLCLEFWYLMIIVVITGRLKNPLIPVDAISICLNITGWDAMIAIGFNAAISVRVSNELGAGDFKAARFAVWVVSITSVSIGVVVMIVVLATRDYFPYLFTTSIAVAKETTKLAILLAITALLNSLQPVLSGVAVGAGWQAIVAYINVGCYYIIGLPAGIILGFTFDFGVEGIWSGMLGGIALQTTILIIVTSLTNWEKQVEEAKSRVRNWGRINCV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0186 481 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 468 - -
Ssu5g0186 481 TIGRFAM matE: MATE efflux family protein 42 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g0186 481 CDD MATE_eukaryotic 32 467 IPR045069 GO:0042910|GO:1990961
Ssu5g0186 481 Pfam MatE 42 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g0186 481 Pfam MatE 263 423 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g0186 481 PANTHER PROTEIN DETOXIFICATION 33 22 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0186 Ssu-Chr5 3754865 3767464 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0186 K03327 - gmx:100781278 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0186 5 3754865 3767464 Ssu5g0186 5 3754865 3767464 ECH