Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0113 ATGGGTCTGAAATCACCAGACAACTCAATTTCTGAAGGAAGGCCATCATTTGTACTCTCTACTTGCAGCAATGAAATGGCAGCTGGATCCCTATGCGGATCATCTGATGGCTGGTCAATGCGCACCTTTTCTGAGCTGGTGGCCTCATCCCAAAGGGAAAGGTGGTCTTTCGATAGTGAGTGTTTCGGCTCTGGTCGTCTCAAGATAAGTGGATCCAGTAGCAGGTTCTCGTATTCTCCCTCCATGGAACTACAATCTTGTGGGGCTTGCTCAAAGCTCTTGACTGAGAAATCAACATGGAGCAACCAGAAGTTTATTGCCAGCAGCGACCTCTCAGTTGTTGCTGTTCTGGTCTGTGGTCATGCGTATCATGCAGAATGTTTAGAGGCTATGACACCAGAGGCAGATAGGTATGATCCAGTTTGTCCAATTTGTATGGTTGGAGATAAGCACTTGTCAAAGTTGTCCAGGAAAGTTCTTCGGGCTGAATCAGAGATAAAGGCCAAGAACCACAAGATATCCAGAAACCGTGTAGTTGATAGCTACCTTGATGGTGGTTTTGATGTTTTTGATCACCAGAAAGATATCGAATTGGGAGGAAAAGTGTCAAAAATGGAGCCTAGCTCCAGTGCGAGGAGCTCATTTGGAAAGCCATTCTTGAGGCGTCACTTTTCACTTGGGTCCAAGTGGAGCCGATCCCTGTCCGAGAATGATTCTGCCAGGAGGAAAGGCTTTTGGGCAAGATATCGCAAAGATTGA 759 0.4651 MGLKSPDNSISEGRPSFVLSTCSNEMAAGSLCGSSDGWSMRTFSELVASSQRERWSFDSECFGSGRLKISGSSSRFSYSPSMELQSCGACSKLLTEKSTWSNQKFIASSDLSVVAVLVCGHAYHAECLEAMTPEADRYDPVCPICMVGDKHLSKLSRKVLRAESEIKAKNHKISRNRVVDSYLDGGFDVFDHQKDIELGGKVSKMEPSSSARSSFGKPFLRRHFSLGSKWSRSLSENDSARRKGFWARYRKD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0113 252 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 246 - -
Ssu5g0113 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 147 IPR013083 -
Ssu5g0113 252 Coils Coil 152 172 - -
Ssu5g0113 252 ProSiteProfiles Zinc finger RING-type profile. 87 145 IPR001841 -
Ssu5g0113 252 SUPERFAMILY RING/U-box 82 146 - -
Ssu5g0113 252 SMART ring_2 87 145 IPR001841 -
Ssu5g0113 252 PANTHER EXPRESSED PROTEIN 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0113 Ssu-Chr5 2384448 2385206 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0113 - - gmx:100800918 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0113 5 2384448 2385206 Ssu5g0113 5 2384448 2385206 ECH