Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0088 ATGGTTCCTGGAAAAGTTTTCCAGGAATCCTCAAGTAATGGAGCTCTAAAGTTATCTGGATGCCATGTGGAAGTAGATGGAGGTGGAAAATCAGAAACTGAGTTTGTTTCCAATAGAAATTTCTGTGATTATAATAGTTTAGATACAAAGGCTGAAGTGCAAGATTTTGTTTTAGGTTTTTCACCTAAAAGAAATGATGTAACTGTCAGTGGTAGTTTATCTTCTATGGTGTCTAATGAAGCCGAATTGGCTGCCCACTCAAGTCACCCAGAGAAACCACTAGAAGCTTGCAATATTGCAAAAGACTCCACTGCTTCAATTCTGAAATGTAGCTCAGTGTTAGATCCAATTCAATCTGATGGATCCTCTCTTCAATCCTCAATTCCAGATGAAAATGGGAACTATGCAGAATACCATGCCTCTGTGTCTGATTTTGCTGATAACGATGGTAAGATATCAAGCATTCCACGTGCGGTGCGAAAGGCCAAAATGCGTAAGCATGGAGACATGACATATGAAGGGGATGCTGATTGGgagattttaattaatgatcaaGCTCTAAATGAAAGTCAAGTTATGGTAGATGGTGACCGCACTCTTAGAACAAGAATGAAGCATGATTCTTCTTTGAATACTGGTGAAGACTCTGAAAGTGTTGCAGTAGTAGCAGTATCAGCTGGGCTGAAAGCCCATAAAGCTGGtccaattgagaaaataaagtttaaggAGATCTTGAAGCGCAAAGGTGGTCTCAAGGAATATTTGGATTGCAGAAATCAGATTTTAAGTCTCTGGAGCAGAGACGTCACGCGTATTTTGCCTCTTGCTGAATGTGGAATTAGTGATACTCATTCTGAGGATGGAAGCCCTCGTTCTTCTCTTATTAGGGAGGTCTATGCATTTCTCGATCAATATGGTTATATAAATGTTGGAATTGCTTCTCAGAAGGAGAATGTTGGAAGTAGTGCAAAACATTGTTATAAACTGgtcaaagaaaaaggttttgagGAAAGTTCTGCAGCTTCAGTGGCCGACTCCGAAGATGGAGTTTCCTTTATTGTTGGTCAGACTAAAATGTCAGATGCTTCCAATGAGATTAACAATGGTCTAACAAAGGATTGCAATGACCTAACAACTGAAGCTACAGAAGGCATGAGGCATGTTAATGAAGTGAGGATGGATTTGTCAAACATGACACGACAGGCAGAAAGAAAAGATTTTGATTACCAAGAAAATGATGGGTTTCAGGATGGAAGTATACATGTCACTATTGACAGTTCCGTTCCTTCTTCCATGTTTCCTGATTGCAGATTGACTTCTCTGGTAGCTACAGAGAAAAGCCATGACTCTACCTGTATTAAATCTGCTTTAGGTGGTCAGGTAGGTGATCCTCTGCAGTCTGATTTAGATCCTAGAAAGAGAGTAATTGTCATTGGAGCTGGTCCTGCCGGGCTAACTGCTGCTCGCCACTTGCAACGTCGGGGATTTCCTGTAACTGTGCTCGAGGCTAGGAGTAGGATAGGAGGTCGTGTATTTACTGACTGCTCATCTCTTTCTGTCCCCGTGGATCTCGGTGCTAGCATTATAACTGGTGTTGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCATTGATTTGTGCTCAGTTGGGGCTTGAGTTGACAGTGTTGAACAGTGATTGCCCTCTTTATGACATAGTGACAGGACAAAAAGTTCCTGCAGATATGGATGAAGCACTGGAAGCTGAATATAATAGTCTTATTGATGACATGGTATTGGTTGTTGCTCAGAAAGGTGAACAAGCAATGAGAATGTCTCTTGAAGATGGTTTAGAATATGCCCTTAAGATTCGCCGTATGGCACGCTCTGAAAGTAGTGAAGAAACTGAACAAAATAATTCTGCAAATAGTCCATTTGATTCCAAAAAAGACAGTACCGTGGAAAAAAAACTTGATGAGGAGATTTTGAGTCCTCAGGAGAGGAGAGTTATGGATTGGCACTTTGCTCATTTGGAGTACGGTTGTGCTGCTTTGCTTAAGGATGTTTCTCTTCCTTACTGGAATCAAGATGATGTGTATGGAGGTTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGCTCTGTTGTTGAGTCTCTGGGAGAAGGACTTACAATTCACTTTAACCATGTCGTAGCAAATGTTTCATATGGTATCAAGGAACCTGGCCAGAGCAATAAAGTCAAAGTTTCTACGTCAAATGGCAATGAGTTCTTTGGAGATGCTGTCCTTGTTACTGTTCCGCTTGGCTGTTTGAAGGCTGAAACTATACAATTCTCCCCACCTTTGCCACAGTGGAAATGTTCTGCTGTTCAGCGTCTTGGTTTTGGAGTTCTAAATAAAGTGATTTTGGAATTTCCTAGTGTATTTTGGGATGATGCTGTGGACTACTTTGGAGCAACAGCTGAGGAGAGAAGCAGTAGAGGTCACTGCTTTATGTTCTGGAATGTCAGGAAAACAGTTGGAGCTCCTGTCCTTATAGCATTAGTGGTTGGTAAGGCAGCCATAGACGGTCAAAGCTTGAGCTCTTCTGATCATGTTAACCATGCAGTGAAGGTTCTCCGTAAACTTTTTGGGGAGGATTCAGTTCCTGATCCTGTTGGCTATGTTGTGACTGATTGGGGTAGGGATCCTTTTAGCTACGGTGCTTATTCTTACGTTGCTGTTGGAGCATCAGGAGAAGACTATGATATATTAGGGAGACCAGTTGATAACTGCTTGTTTTTTGCTGGTGAAGCAACCTGCAAAGAGCACCCAGATACTGTCGGTGGTGCAATGATGAGTGGACTACGAGAGGCTGTTCGCATAATTGACATATTGAGCACCGGAAATGATTATATTGCAGAGGTGGAGGCATTGGAAGCTGCACGGGGACAGTTGGACACTGAAAGGGATGAAGTTAGGGATATAATAAAGAGACTTGATGCAGTAGAGCTTTCTAACATAATGTACAAGAACTCTTTAGatggtgctcaaattttaacCCGGGAAGCTTTGCTAAGGGAAATGTTCTTTAATGCAAAAACCACTGCTGGGCGCTTGCATGTGGCCAAACAATTGCTTACTCTTCCTGTTGGAAACTTGAAGTCTTTTGCTGGAAATAAAGAGGGGCTAGCCATTCTCAATTCATGGATATTGGACTCAATGGGGAAGGATGGTACCCAACTCTTGAGGCACTGTTTGCGTCTTCTTGTCCGTGTTTCAACTGATCTTCTTGCTGTACGATTATCAgGAATGGGGAAAACAGTGAAGGAAAAAGTTTGTGTACATACTAGCCGTGATATTCGTGCTATAGCAAGCCAGTTGGTCAATGTATGGCTTGAAGTTTTCCGCAAGGAAAAAGCTTCTAATGGTGGATTGAAGATGTCAAGACAAACAACTGCTGTGGATTTATCAAAGAGAAAATCTATAAAAGATTCAGCCTTGGGAAAGCCACCTTTGAGCACATATCATGGTACCATTGAGAATAAAGGAGGCTTGCTGAATCCTGCATCTGCTGGAAGCAATTCACCTTCCACTGCACATGTGAAGAAGTTGCACGGCAAACAAGGAAGACAACAAGCAGTATATGACTCAAGGCATGAGGTCAGTTCTTCCAGGTCTAAAGGTTCAGTAGATAAAGTAGTTACCGAGAATGAGGATAACCACTGTGCTATATCTGAAGAAGAACAGGCTGCTATAGCTGCTGCAGAAGCTGCCCGTGCTAAAGCTCTTGCTGCTGCTGAGGCATATGCCTCTGCAGAAGCCAGATGCAATACGCTGTTACAGCTTCCAAAGATACCCTCATTCCACAAATTTGCTAGACGTGAGCAGTATTCACAAAATGATGAGTGTGATAGCAGAAAAAGATGTGGTGTTTTGGGAAGGCAAGATTGTATTTCAGAGATTGATTCTAGGAATTGCAGAGTTAGGGACTGGTCTGTTGATTTCTCTGCTGCTTGTGTCAACCTTGATAATTCCAGAATGCCAGTTGATAACCTCTCACAGAGGAGTCATTCAAATGAGATTGCCAGCCATTTGAATTTCAGAGAGCACTCAGGAGAAAGTGTTGCTGGGGACAGCAGTATATATACAAAAGCTTGGATTGACACAGCTGGTGGTGTTGCAATTAAAGACTGTCATGCCATAGAGAGATGGCAATCTCAAGCAGCTGCAGctgattcttatttttctaaCCCAACTATTCATTTGAAGGATGAGGAGGATTCAAATGCCTGTTCAAAGCCACCCAGCTGGAAGCATGATGGTATCGCAAATGAGAGCTCTATTTCACAGGTTACTGTAAATAAGGAGGCTGTAAAAAGTCATTCCCGAGGAGCAGATCATATTAAACTAGCTGTAGTGGACTATGTTGCATCACTACTTATGCCCCTTTATAAGGCAAGGAAACTAGACAAGGATGGATACAAGGCTATAATGAAGAAAAGTGCAACAAAGGTCATGGAGCAAGCCACAGATGCAGAAAAAGCCATGACTGTTCGTGAGTTTCTAGATTttaagcgaaagaataagATTCGCTCCTTTGTGGATATATTGATCGAGAGACACATGACAACGAAACCAGATATGAAATCTTAA 4626 0.4135 MVPGKVFQESSSNGALKLSGCHVEVDGGGKSETEFVSNRNFCDYNSLDTKAEVQDFVLGFSPKRNDVTVSGSLSSMVSNEAELAAHSSHPEKPLEACNIAKDSTASILKCSSVLDPIQSDGSSLQSSIPDENGNYAEYHASVSDFADNDGKISSIPRAVRKAKMRKHGDMTYEGDADWEILINDQALNESQVMVDGDRTLRTRMKHDSSLNTGEDSESVAVVAVSAGLKAHKAGPIEKIKFKEILKRKGGLKEYLDCRNQILSLWSRDVTRILPLAECGISDTHSEDGSPRSSLIREVYAFLDQYGYINVGIASQKENVGSSAKHCYKLVKEKGFEESSAASVADSEDGVSFIVGQTKMSDASNEINNGLTKDCNDLTTEATEGMRHVNEVRMDLSNMTRQAERKDFDYQENDGFQDGSIHVTIDSSVPSSMFPDCRLTSLVATEKSHDSTCIKSALGGQVGDPLQSDLDPRKRVIVIGAGPAGLTAARHLQRRGFPVTVLEARSRIGGRVFTDCSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLNSDCPLYDIVTGQKVPADMDEALEAEYNSLIDDMVLVVAQKGEQAMRMSLEDGLEYALKIRRMARSESSEETEQNNSANSPFDSKKDSTVEKKLDEEILSPQERRVMDWHFAHLEYGCAALLKDVSLPYWNQDDVYGGFGGAHCMIKGGYSSVVESLGEGLTIHFNHVVANVSYGIKEPGQSNKVKVSTSNGNEFFGDAVLVTVPLGCLKAETIQFSPPLPQWKCSAVQRLGFGVLNKVILEFPSVFWDDAVDYFGATAEERSSRGHCFMFWNVRKTVGAPVLIALVVGKAAIDGQSLSSSDHVNHAVKVLRKLFGEDSVPDPVGYVVTDWGRDPFSYGAYSYVAVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILSTGNDYIAEVEALEAARGQLDTERDEVRDIIKRLDAVELSNIMYKNSLDGAQILTREALLREMFFNAKTTAGRLHVAKQLLTLPVGNLKSFAGNKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKMSRQTTAVDLSKRKSIKDSALGKPPLSTYHGTIENKGGLLNPASAGSNSPSTAHVKKLHGKQGRQQAVYDSRHEVSSSRSKGSVDKVVTENEDNHCAISEEEQAAIAAAEAARAKALAAAEAYASAEARCNTLLQLPKIPSFHKFARREQYSQNDECDSRKRCGVLGRQDCISEIDSRNCRVRDWSVDFSAACVNLDNSRMPVDNLSQRSHSNEIASHLNFREHSGESVAGDSSIYTKAWIDTAGGVAIKDCHAIERWQSQAAAADSYFSNPTIHLKDEEDSNACSKPPSWKHDGIANESSISQVTVNKEAVKSHSRGADHIKLAVVDYVASLLMPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKAMTVREFLDFKRKNKIRSFVDILIERHMTTKPDMKS 1541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0088 1541 PRINTS Adrenodoxin reductase family signature 474 496 - -
Ssu5g0088 1541 PRINTS Adrenodoxin reductase family signature 497 510 - -
Ssu5g0088 1541 Gene3D - 475 951 IPR036188 -
Ssu5g0088 1541 MobiDBLite consensus disorder prediction 629 643 - -
Ssu5g0088 1541 MobiDBLite consensus disorder prediction 1178 1192 - -
Ssu5g0088 1541 Gene3D - 218 323 IPR036388 -
Ssu5g0088 1541 SUPERFAMILY Homeodomain-like 217 314 IPR009057 -
Ssu5g0088 1541 PANTHER FLAVIN MONOAMINE OXIDASE 150 1537 - -
Ssu5g0088 1541 ProSiteProfiles SWIRM domain profile. 219 319 IPR007526 GO:0005515
Ssu5g0088 1541 Pfam SWIRM domain 230 309 IPR007526 GO:0005515
Ssu5g0088 1541 MobiDBLite consensus disorder prediction 624 654 - -
Ssu5g0088 1541 Pfam Flavin containing amine oxidoreductase 483 953 IPR002937 GO:0016491
Ssu5g0088 1541 SUPERFAMILY FAD/NAD(P)-binding domain 471 955 IPR036188 -
Ssu5g0088 1541 Coils Coil 969 989 - -
Ssu5g0088 1541 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 150 1537 - -
Ssu5g0088 1541 MobiDBLite consensus disorder prediction 1156 1222 - -
Ssu5g0088 1541 Gene3D - 581 908 - -
Ssu5g0088 1541 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1051 1135 IPR035441 -
Ssu5g0088 1541 SUPERFAMILY FAD-linked reductases, C-terminal domain 791 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0088 Ssu-Chr5 1935953 1950566 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Ssu5g0088 Amino_oxidase 5.1e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0088 - - gmx:100791869 2721.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0088 5 1935953 1950566 Ssu5g0088 5 1935953 1950566 ECH