Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0054 ATGAGGAAGTGGACGGTCGCTTCTGCTCTCCTTCTACTCtgtctcctctctctctttgcAGATCAAGGTCGAAAGTTTCAGGCGAATGCCGAGGCTGATTCCGACGAGCTTGTAGATCCACCAAAGGTAGAGGACAAGATCGGCGCTGTTCCTAATGGCCTTTCCACCGATTCAGATGTGGCCCAAAGGGAGGCGGAGTCGATCTCGAAGAGATCTCTTCGGAGCAACGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCACGGCTCATGGATATTATCATCAACTCTCTCTACAGTAACAAGGATATATTCCTCAGAGAGTTGATTTCCAATGCTTCTGACGCTTTGGACAAGATTAGGTTCCTCTCCCTAACGGACAAGGATGTTTTGGGAGAAGGTGATAACACCAAGCTTGATATTCAGATTAAGTTggacaaggaaaagaaaattctcTCAATTCGAGACAGAGGTATCGGTATGACGAAGGAggatttaataaagaatttggGGACCATAGCAAAATCTGGAACTTCAGCATTCGTTGAGAAAATGCAAACAAGTGGAGATCTCAATCTGATTGGGCAGTTTGGAGTCGGCTTCTACTCTGTGTATCTCGTGGCTGATTATGTTGAAGTCGTTAGCAAGCATAATGATGATAAACAGTATGTATGGGAATCAAAAGCTGATGGAGCATTTGCAATTTCGGAAGATACATGGAATGAACCACTAGGACGTGGAACTGAGATTAGATTACACCTTAAAGAAGAGGCTGGGGAGTACTTGGAGGAGTCTAAACTGAAAGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGGCAAGCAAAGAGGTTGATGTGGAGGTTCCAGCTGATGAGGATGACTCCAGTGATGAAGAGGATTcatCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAgtgaagatgaagaaaaaaagcCTAAGACAAAGACAGTGAAGGAAACAACTTATGAATGGGAACTTTTAAATGATGTGAAAGCTATCTGGCTGAGGAATCCAAAGGAGGTAACAGACGAAGAATACACCAAATTCTACCACTCTCTTGCCAAGGATTTCAGTGATGAGAAACCTCTAGCATGGAGTCACTTCACTGCTGAAGGTGATGTCGAGTTCAAGGCAGTCCTGTTTGTACCACCTAAGGCACCTCAAGATTTATATGAGAGCTATTATAACGCAAACAAATCCAACCTGAAGTTGTATGTTAGACGAGTGTTCATTTCAGATGAATTTGACGAACTGTTGCCTAAGTACCTAAACTTTTTGAAGGGTCTTGTTGATTCTGACACGCTGCCACTTAATGTATCGCGAGAAATGCTTCAACAACATAGTAGTCTAAAGACAATCAAGAAGAAACTTATTAGGAAGGCCCTTGATATGATCCGTAGGATTGCAGATGAGGATCCTGACGAGTCCActgacaaagaaaagaaagAAGATACGTCCTCTGACAACGATGAGAAGAAAGGTCAATATGCTAAGTTCTGGAATGAGTTTGGCAAGTCCATTAAACTTGGTATCATCGAGGATGCCACCAACAGAAATCGTTTGGCAAAACTGCTCAGATTTGAGAGCACCAAGTCTGAGGGTAAATTGACATCTCTGGATCAGTACATATCTAGAATGAAAGCTGGGCAGAAGGATATCTTTTACATTACTGGAACCAGCAAAGAACAACTGGAAAAATCTCCATTCCTTGAGCGgcttaagaagaaaaattttgagGTTATTTTCTTCACAGATCCTGTTGATGAATACTTGATGCAATACCTGATGGATTATGAAGACAAGAAGTTCCAAAATGTGTCCAAGGAGGGTTTGAAACTTGGGAAGGATGCAAAAGACAAGGAACTGAAGGAATCCTTTAAGGATCTTACTAAGTGGTGGAAAAATGCTCTTTCCAAAGACAATGTTGATGATGTGAAGATATCCAACCGGTTGGATAACACTCCTTGTGTAGTGGTGACATCAAAATATGGGTGGAGTGCTAACATGGAGAGAATCATGCAGTCTCAAACTTTGTCAGATGCTAGCAAGCAAGCATACATGCGTGGCAAGAGGGTTCTTGAGATCAATCCTAGACACCCTATTATCAAGGAGCTCCGGGAGAGAGTAGTAAAGAACCCTGAGGATGAGGGTGTGAAACAAACGGCACAGCTGATGTACCAGACTGCACTCTTCGAAAGTGGCTTCTTGCTTGATGATCCCAAGGATTTTACTTCCCGTATTTATGATTCAGTGAAGTCTAGCTTGGACATCAATCCTGACGCAACAgttgaagaagaagatgacaCCGAAGTAGAGGCTGAAAGTGATGCAAAAGAAGATGCATCTACTTCAACACCTGAAGCTGATGCAGTTAATGATGATGCTGATGTCAAGGACGAGTTGTAG 2460 0.4041 MRKWTVASALLLLCLLSLFADQGRKFQANAEADSDELVDPPKVEDKIGAVPNGLSTDSDVAQREAESISKRSLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKDVLGEGDNTKLDIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVVSKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLKEEAGEYLEESKLKELVKRYSEFINFPIYIWASKEVDVEVPADEDDSSDEEDSSESSSKEESEDEDADKSEDEEKKPKTKTVKETTYEWELLNDVKAIWLRNPKEVTDEEYTKFYHSLAKDFSDEKPLAWSHFTAEGDVEFKAVLFVPPKAPQDLYESYYNANKSNLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRRIADEDPDESTDKEKKEDTSSDNDEKKGQYAKFWNEFGKSIKLGIIEDATNRNRLAKLLRFESTKSEGKLTSLDQYISRMKAGQKDIFYITGTSKEQLEKSPFLERLKKKNFEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDAKDKELKESFKDLTKWWKNALSKDNVDDVKISNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKNPEDEGVKQTAQLMYQTALFESGFLLDDPKDFTSRIYDSVKSSLDINPDATVEEEDDTEVEAESDAKEDASTSTPEADAVNDDADVKDEL 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0054 819 MobiDBLite consensus disorder prediction 778 793 - -
Ssu5g0054 819 PANTHER BNAA08G14800D PROTEIN 19 802 - -
Ssu5g0054 819 Pfam Hsp90 protein 259 798 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Ssu5g0054 819 Gene3D - 634 780 IPR037196 -
Ssu5g0054 819 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Ssu5g0054 819 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Ssu5g0054 819 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Ssu5g0054 819 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Ssu5g0054 819 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Ssu5g0054 819 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Ssu5g0054 819 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Ssu5g0054 819 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
Ssu5g0054 819 MobiDBLite consensus disorder prediction 293 323 - -
Ssu5g0054 819 MobiDBLite consensus disorder prediction 774 819 - -
Ssu5g0054 819 Hamap Chaperone protein HtpG [htpG]. 75 770 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Ssu5g0054 819 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 19 802 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Ssu5g0054 819 SMART HKATPase_4 100 257 IPR003594 -
Ssu5g0054 819 MobiDBLite consensus disorder prediction 30 56 - -
Ssu5g0054 819 SUPERFAMILY HSP90 C-terminal domain 646 768 IPR037196 -
Ssu5g0054 819 Gene3D - 540 627 - -
Ssu5g0054 819 SUPERFAMILY Ribosomal protein S5 domain 2-like 348 627 IPR020568 -
Ssu5g0054 819 MobiDBLite consensus disorder prediction 487 510 - -
Ssu5g0054 819 PIRSF HSP90_HTPG 52 813 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Ssu5g0054 819 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
Ssu5g0054 819 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Ssu5g0054 819 Gene3D - 347 539 - -
Ssu5g0054 819 MobiDBLite consensus disorder prediction 293 334 - -
Ssu5g0054 819 CDD HATPase_Hsp90-like 87 277 - -
Ssu5g0054 819 Gene3D - 65 300 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0054 Ssu-Chr5 997719 1002335 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0054 K09487 - gmx:100779976 1432.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0054 5 997719 1002335 Ssu5g0054 5 997719 1002335 ECH