Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0048 ATGATATCAGAGGGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGCCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGGACGAAAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCGGAGCTTCGAACTTCTAGGCTGTCACCTCACAAATACTATGAACTGTATATGAGAGCCTTCGACGAGCTTCGGAGGCTGGAGATTTTCTTCAAAGATGAAAGCAGACACGGCGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCATGCTGGAAATATATTGCCTAGACTGTATCTCCTTTGCACGGTAGGATCCGTTTACCTGAGATGCAAGGATGCTCCAGTAAGGGATGTTCTTAAAGATCTAGTGGAAATGTGTCGCGGCGTTCAGCATCCGATTCGCGGTCTGTTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAAAATGAAGAGGGGGAATCTAATGGTGTGATAGATGCAGTTGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGCAACAGGGACCCGATCGGATTAGAGAGAagagggaaaaagaaaggaacGAGCTTCGTGAtcttGTAGGGAAGAATCTACATGTTCTGAGTCAGATAGAGGGTGTGGACCTTGAGATGTACAAAGACACCGTTCTTCCAAGTGTCTTAGAGCAGGTTGTCAACTGTAAAGATGAGCTTGCCCAGTTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCAGATGAGTTCCATTTGCAGACACTTGAGACACTGTTAGGTGCTTGCCCCCAATTGCAGCCCACCGTAGACATCAAGACAGTGTTATCTCAGTTGATGGACAGGCTGTCTAATTATGCTGTCTCAAGTACTGAAGTATTACCTGAATTTCTGCAAGTGGAAGCATTTAACAAATTAAGCACAGCAATAGGCAGGGTGATAGAAGCACAAGTTGACCTGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGGGATCATGTGTCAAGAAGCTTTATGGAAAACCAAAGCTTGATGACAATAGAGCAACAAAGCAAGTTGTTGCACTTTTAAGTGCTCCACTTGATAAATACAATGATATCGTGACTGCCCTGACACTCTCCAATTATCCTCGTGTAATGGATCATCTTGATCATGAAACAAATAAAGTCATGGCCATGGTTATTATCCAAAGCATTATGAAGAATAACACTTGCATCTCTACTGCCGATAAGGTTgaagttttatttgaattaataaaagggCTTATAAAGGACTTGGATGGAACAACTGGGGATGAGgttgatgaagaagattTCAATGAGGAACAAAATTCTGCTGCTCGCCTCATACACATGCTTCATAATGTTGACCCAGAGGAAATGTTTAAGATAATATGTACCGTAAAGAAGCATATTATGAGTGGAGGACCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTTAGGTTGATCAGGCAATTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCtacaacaccaaaaaaaatatttcagctTTTAAATGAgACCATTGAAGCTCTTTCTTCTGTATCATCTCCTGAACTCGCCCTGAGACTGTATCTGCAATGTGCTGAGgCTGCTAATGACTGTGACCTCGAGCCTGTTGCTTATGATTTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGcgGACTCTAAAGCCCAGATAACTGCAATACATTTAATAATCGGGACTCTTCAGAGAATGAATGTCTTTGGCGTTGAGAACAGGGATACATTAACACACAAGGCCACAGGGTATTCAGCGAAGCTTTTAAAGAAACCTGATCAGTGCCGAGCAGTTTATGCATGCTCTCATCTCTTTTGGGTTGATGATCAAGATGGTATTAAAGATGGAGAAAGGGTATTGCTTTGCCTTAAGCGTGCTTTGAGGATTGCAAATGCTGCTCAACAAATGGCCAATGTAGCAAGGGGTAGCAGTGGTCCAGTAACTCTATTTGTTGAAATACTGAACAAGTACATTTACTATTTTGAGAAAGGAAACCCGCAGATCACTAGTTCTACTATCCAGGGGCTTATAGATTTGATCACGACTGAGATGCAGAGTGACTCTACATCAGCTCTTCCAGCTTCAGATGCGTTTTTTACTGGCACTTTGAGGTACATTCAATTCCAAAAACAGAAGGGTGGTATACTGGGTGAAAAATATGACCCTATCAAGGTCAAAATCTCTGCTTAA 2388 0.4091 MISEGFEDEEKWLAEGIAAIQHNAFFMHRALDENNLRDALKYSAQMLSELRTSRLSPHKYYELYMRAFDELRRLEIFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYLRCKDAPVRDVLKDLVEMCRGVQHPIRGLFLRSYLSQVSKDKLPDIGYENEEGESNGVIDAVEFVLQNFTEMNKLWVRLQQQGPDRIREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKDTVLPSVLEQVVNCKDELAQFYLMECIIQVFPDEFHLQTLETLLGACPQLQPTVDIKTVLSQLMDRLSNYAVSSTEVLPEFLQVEAFNKLSTAIGRVIEAQVDLPIVGAIALHVSLLTFTLRVHPDRLDYVDQVLGSCVKKLYGKPKLDDNRATKQVVALLSAPLDKYNDIVTALTLSNYPRVMDHLDHETNKVMAMVIIQSIMKNNTCISTADKVEVLFELIKGLIKDLDGTTGDEVDEEDFNEEQNSAARLIHMLHNVDPEEMFKIICTVKKHIMSGGPRRLPFTVPSLIFSALRLIRQLQGQDGDIVGEEVPTTPKKIFQLLNETIEALSSVSSPELALRLYLQCAEAANDCDLEPVAYDFFTQAFVLYEEEIADSKAQITAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVTLFVEILNKYIYYFEKGNPQITSSTIQGLIDLITTEMQSDSTSALPASDAFFTGTLRYIQFQKQKGGILGEKYDPIKVKISA 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0048 795 Pfam Vacuolar protein sorting-associated protein 35 12 748 IPR005378 GO:0015031|GO:0030906|GO:0042147
Ssu5g0048 795 PANTHER VACUOLAR SORTING PROTEIN 35 2 791 IPR005378 GO:0015031|GO:0030906|GO:0042147
Ssu5g0048 795 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 791 - -
Ssu5g0048 795 SUPERFAMILY ARM repeat 211 620 IPR016024 -
Ssu5g0048 795 Gene3D - 467 776 IPR042491 -
Ssu5g0048 795 PIRSF Retromer_Vps35 3 793 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0048 Ssu-Chr5 908832 917872 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0048 K18468 - gmx:100778365 1481.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0048 5 908832 917872 Ssu5g0048 5 908832 917872 ECH